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Loge #44

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merged 3 commits into from
Jul 3, 2020
Merged

Loge #44

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3ccc2bb
make faster
ptdtan Jul 3, 2020
f5539b3
change description
ptdtan Jul 3, 2020
b159cc6
change to log natural
ptdtan Jul 3, 2020
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: Signac
Title: An analytics package for Single-cell data
Version: 0.0.5
Version: 0.0.6
Author: BioTuring INC.
Maintainer: BioTuring <support@bioturing.com>
Description: We introduce Signac, a versatile R package to facilitate the analysis workflow for single-cell data. It helps to find marker genes faster and more accurate, search for cells with similar expression profiles, integrate multiple datasets in the BioTuring Browser database (know more about BioTuring Browser), etc. For users with a limited computational resource, we provide the helper functions to exercise all analyses for the large-scale datasets from disk. Because of its speed and flexibility, it can be adapted to any existing R analysis pipeline to help explore single-cell data more efficient.
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2 changes: 1 addition & 1 deletion src/Makevars
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@@ -1,6 +1,6 @@
CXX_STD = CXX11
CFLAGS = -Wall -Wextra -pedantic -std=c11 -DDEBUG=0
MAKEFLAGS=-j16
MAKEFLAGS=-j40

USER_INCLUDE = ${R_PACKAGE_DIR}/include
USER_LIB_DIR = ${R_PACKAGE_DIR}/lib${R_ARCH}
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2 changes: 1 addition & 1 deletion src/Venice.cpp
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Expand Up @@ -331,7 +331,7 @@ double ComputeLogFC(
m[0] /= cnt[0];
m[1] /= cnt[1];

return log2(m[0] + 1) - log2(m[1] + 1);
return log(m[0] + 1) - log(m[1] + 1);
}

struct rightshift {
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