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[ci skip] add build failure record for recipe recipes/bioconductor-cn…
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recipes/bioconductor-cnorfuzzy/build_failure.osx-64.yaml
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| recipe_sha: 336f832a065f93a0fe3ee33cc92fbddb027456de97f0327b7f28b769fde0c765 # The hash of the recipe's meta.yaml at which this recipe failed to build. | ||
| skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above. | ||
| log: |- | ||
| source tree in: /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-graph_1734542493437/work | ||
| export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-graph_1734542493437/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place | ||
| export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-graph_1734542493437/_build_env | ||
| export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-graph_1734542493437/work | ||
| INFO: activate-gfortran_osx-64.sh made the following environmental changes: | ||
| DEBUG_FFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments | ||
| DEBUG_FORTRANFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments | ||
| F77=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| F90=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| F95=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| FC=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| FC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| FFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| FORTRANFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| GFORTRAN=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| INFO: activate_clang_osx-64.sh made the following environmental changes: | ||
| AR=x86_64-apple-darwin13.4.0-ar | ||
| AS=x86_64-apple-darwin13.4.0-as | ||
| CC=x86_64-apple-darwin13.4.0-clang | ||
| CC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms | ||
| CLANG=x86_64-apple-darwin13.4.0-clang | ||
| CMAKE_ARGS=-DCMAKE_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin | ||
| CMAKE_PREFIX_PATH=:$PREFIX | ||
| CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0 | ||
| CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0 | ||
| CPP=x86_64-apple-darwin13.4.0-clang-cpp | ||
| CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 | ||
| CPP_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp | ||
| DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| HOST=x86_64-apple-darwin13.4.0 | ||
| INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool | ||
| LD=x86_64-apple-darwin13.4.0-ld | ||
| LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib | ||
| LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib | ||
| LIBTOOL=x86_64-apple-darwin13.4.0-libtool | ||
| LIPO=x86_64-apple-darwin13.4.0-lipo | ||
| MESON_ARGS=-Dbuildtype=release --prefix=$PREFIX -Dlibdir=lib | ||
| NM=x86_64-apple-darwin13.4.0-nm | ||
| NMEDIT=x86_64-apple-darwin13.4.0-nmedit | ||
| OBJC=x86_64-apple-darwin13.4.0-clang | ||
| OBJC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| OTOOL=x86_64-apple-darwin13.4.0-otool | ||
| PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff | ||
| RANLIB=x86_64-apple-darwin13.4.0-ranlib | ||
| REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding | ||
| SDKROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk | ||
| SEGEDIT=x86_64-apple-darwin13.4.0-segedit | ||
| SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table | ||
| SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack | ||
| SIZE=x86_64-apple-darwin13.4.0-size | ||
| STRINGS=x86_64-apple-darwin13.4.0-strings | ||
| STRIP=x86_64-apple-darwin13.4.0-strip | ||
| _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0 | ||
| ac_cv_func_malloc_0_nonnull=yes | ||
| ac_cv_func_realloc_0_nonnull=yes | ||
| build_alias=x86_64-apple-darwin13.4.0 | ||
| host_alias=x86_64-apple-darwin13.4.0 | ||
| INFO: activate_clangxx_osx-64.sh made the following environmental changes: | ||
| CLANGXX=x86_64-apple-darwin13.4.0-clang | ||
| CXX=x86_64-apple-darwin13.4.0-clang | ||
| CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| CXX_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| INFO: activate_clang_osx-64.sh made the following environmental changes: | ||
| CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin | ||
| CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 | ||
| CPP_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp | ||
| DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib | ||
| LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib -headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib | ||
| OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| -CC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| -CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| -CMAKE_ARGS=-DCMAKE_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin | ||
| -CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 | ||
| -CPP_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp | ||
| -DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-graph-1.84.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| -LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib | ||
| -LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib | ||
| -OBJC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| x86_64-apple-darwin13.4.0-clang -I"$PREFIX/lib/R/include" -DNDEBUG -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.13 -mmacosx-version-min=10.13 -I$PREFIX/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/r-base-split_1734433510517/work=/usr/local/src/conda/r-base-4.4.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -c graph.c -o graph.o | ||
| x86_64-apple-darwin13.4.0-clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L$PREFIX/lib/R/lib -Wl,-dead_strip_dylibs -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -o graph.so graph.o -L$PREFIX/lib/R/lib -lR -Wl,-framework -Wl,CoreFoundation | ||
| mv graph.so BioC_graph.so | ||
| Resource usage statistics from building bioconductor-graph: | ||
| Process count: 6 | ||
| CPU time: Sys=0:00:00.4, User=0:00:05.7 | ||
| Memory: 198.6M | ||
| Disk usage: 13.4K | ||
| Time elapsed: 0:00:14.6 | ||
| Packaging bioconductor-graph | ||
| Packaging bioconductor-graph-1.84.0-r44h2f393c0_0 | ||
| number of files: 96 | ||
| Error: Could not find graph.so | ||
| # Last 100 lines of the build log. |