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Release v0.5.4
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althonos committed Oct 15, 2022
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15 changes: 14 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -6,7 +6,20 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.


## [Unreleased]
[Unreleased]: /~https://github.com/althonos/pytrimal/compare/v0.5.3...HEAD
[Unreleased]: /~https://github.com/althonos/pytrimal/compare/v0.5.4...HEAD


## [v0.5.4] - 2022-10-15
[v0.5.4]: /~https://github.com/althonos/pytrimal/compare/v0.5.3...v0.5.4

### Added
- AVX2 and MMX implementations of the SIMD statistics computation.
- Tests for all SIMD implementations supported on the local machine.
### Changed
- Refactor SIMD code using C++ templates and generic implementation.
### Fixed
- Broken rendering of function signatures in Sphinx documentation.
- `residues_mask` and `sequences_mask` attributes of `TrimmedAlignment` not being documented ([#1](/~https://github.com/althonos/pytrimal/issues/1)).


## [v0.5.3] - 2022-10-04
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -159,7 +159,7 @@ on a variable number of sequences from
[`example.014.AA.EggNOG.COG0591.fasta`](/~https://github.com/inab/trimal/blob/trimAl/dataset/example.014.AA.EggNOG.COG0591.fasta),
an alignment of 3583 sequences and 7287 columns.

![Benchmarks](https://raw.githubusercontent.com/althonos/pytrimal/main/bench/v0.5.2.svg)
![Benchmarks](https://raw.githubusercontent.com/althonos/pytrimal/main/bench/v0.5.4.svg)

Each graph measures the computation time of a single trimAl statistic
(see the [Statistics page](https://pytrimal.readthedocs.io/en/stable/statistics.html)
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2 changes: 1 addition & 1 deletion pytrimal/_version.py
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__version__ = "0.5.3"
__version__ = "0.5.4"

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