v0.2.0

nafcodec

Added

• Encoder to write a Nucleotide Archive Format file using generic temporary storage.
• Flag enum to simplify creation and manipulation of Flags objects without u8 arithmetics.
• Builder types for Encoder and Decoder creation with different configurations.
• ExactSizeDecoder trait implementation to Decoder.
• Error variants to return on missing fields and invalid sequence characters.

Changed

• Use iterators internally inside reader code.
• Bumped pyo3 dependency to v0.21.1.
• Bumped zstd dependency to v0.13.1.

Fixed

• Decoding of record lengths when quality field is requested without sequence.
• Compilation issue on 32-bit platforms in parser code.

nafcodec-py

Added

• Support for file-like objects in Decoder.
• Proper error conversion for seek failures.
• Decoder.sequence_type property to get the type of sequence being decoded.
• Constructor for Record objects.
• Decoder properties to access decoded header data.
• Decoder.__len__ implementation using number of sequences in archive.
• Encoder class to support encoding Record objects into an archive.
• nafcodec.open function to get a decoder or encoder based on literal mode.
• Context manager protocol implementation to Decoder objects.

Changed

• Use readinto method of file-like objects given to Decoder if available.

v0.1.1

Added

• nafcodec-py crate with PyO3 bindings.