Visualization

To visualize specific region one have to do the following

        ./cnvnator -root file.root [-chrom chr_name1 ...] -view bin_size [-ngc]

Once prompted enter a genomic region, e.g.

        >chr12:11396601-11436500

or

        >chr12 11396601 11436500

Additionally one can specify length of flanking regions (default is 10 kb) to be also displayed, e.g.

        >chr12:11396601-11436500 100000

or

        >chr12 11396601 11436500 100000

One can also perform instant genotyping by adding word 'genotype', e.g.

        >chr12:11396601-11436500 genotype

or

        >chr12 11396601 11436500 genotype