Skip to content

Supports alternative genome and gene models
Compare
Choose a tag to compare
@hbeale hbeale released this 21 Aug 23:39
· 7 commits to master since this release
v2.0.0
f937b5a
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

This release was used to build the docker ucsctreehouse/bam-mend-qc:2.0.0.

This release can accept a third parameter to specify the bed file used to identify exons, allowing people to use it with alternative genome and gene models. If no bed file is specified, the default included bed file (hg38; gencode 23) is used.

Also:
Refactored/modernized the code in parseReadDist.R
Changed docker and output file names to conform with MEND
Changed column/field names in output to be more intuitive
Specified all libraries in requirements.txt; the resulting Docker container fails otherwise

Assets 2
Loading