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1. viral-assembly-variant-calling viral-assembly-variant-calling Public

   Snakemake pipeline to assemble a viral consensus sequence, and optionally call SNPs and haplotypes

   1

2. ConsIter ConsIter Public

   Python script to generate a reference-guided viral consensus sequence using an iterative mapping and variant calling approach

   Python

3. interspecific_rnaseq interspecific_rnaseq Public

   Python 3 3

4. Baltic_Lab_Wild Baltic_Lab_Wild Public

   Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"

   R 1

5. NEE2020 NEE2020 Public

   Scripts to facilitate the analyses (post SNP-calling) of Stern and Lee 2020. Evolutionary origins of genomic adaptations in an invasive copepod

   Python 2

6. HPV-genotyping HPV-genotyping Public

   Collection of scripts and commands for analyzing Illumina-sequence-based HPV genotyping data

   Shell