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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 240 80

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 220 106

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 208 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 312 repositories
  • workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    NBISweden/workshop-reproducible-research’s past year of commit activity
    HTML 63 CC-BY-4.0 32 7 1 Updated Mar 2, 2025
  • NanoSeq Public

    Analysis software for Nanorate Sequencing (NanoSeq) experiments

    NBISweden/NanoSeq’s past year of commit activity
    C++ 0 AGPL-3.0 0 0 0 Updated Mar 1, 2025
  • AGAT Public

    Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

    NBISweden/AGAT’s past year of commit activity
    Perl 486 GPL-3.0 58 16 (1 issue needs help) 1 Updated Mar 1, 2025
  • Earth-Biogenome-Project-pilot Public

    An assembly workflow for analysing data in the Earth Biogenome Project pilot project.

    NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
    Nextflow 12 GPL-3.0 8 64 1 Updated Mar 1, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 50 4 Updated Feb 28, 2025
  • elixir_evaluation_evaluation Public

    An evaluation of the ELIXIR course evaluation

    NBISweden/elixir_evaluation_evaluation’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
  • bp-sweden-web Public

    Website for BigPicture Sweden

    NBISweden/bp-sweden-web’s past year of commit activity
    SCSS 0 MIT 0 1 1 Updated Feb 28, 2025
  • GenErode Public

    GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

    NBISweden/GenErode’s past year of commit activity
    Python 25 GPL-3.0 7 17 2 Updated Feb 28, 2025
  • workshop-scRNAseq Public

    Single cell RNA sequencing analysis course

    NBISweden/workshop-scRNAseq’s past year of commit activity
    HTML 203 101 4 0 Updated Feb 28, 2025
  • workshop-scRNAseq-devel Public Forked from NBISweden/workshop-scRNAseq

    Single cell RNA sequencing analysis course

    NBISweden/workshop-scRNAseq-devel’s past year of commit activity
    HTML 0 101 3 0 Updated Feb 28, 2025
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