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@MannLabs

Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 63 3

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 116 24

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 468 103

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 171 31

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 84 27

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 80 19

Repositories

Showing 10 of 43 repositories
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 41 Apache-2.0 2 23 5 Updated Feb 28, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 63 Apache-2.0 3 19 8 Updated Feb 28, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 37 Apache-2.0 10 8 9 Updated Feb 28, 2025
  • alphapeptstats Public

    Python Package for the downstream analysis of mass-spectrometry-based proteomics data

    MannLabs/alphapeptstats’s past year of commit activity
    Jupyter Notebook 64 Apache-2.0 15 23 10 Updated Feb 27, 2025
  • scPortrait-notebooks Public
    MannLabs/scPortrait-notebooks’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 1 Updated Feb 27, 2025
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 116 Apache-2.0 24 24 6 Updated Feb 27, 2025
  • py-lmd Public

    Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and convert single-cell segmentation masks.

    MannLabs/py-lmd’s past year of commit activity
    Python 8 MIT 1 6 0 Updated Feb 26, 2025
  • alphashared Public

    Shared non-production code for AlphaX packages

    MannLabs/alphashared’s past year of commit activity
    Python 2 Apache-2.0 2 0 4 Updated Feb 21, 2025
  • alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    MannLabs/alphamap’s past year of commit activity
    Jupyter Notebook 80 Apache-2.0 19 17 6 Updated Feb 20, 2025
  • directlfq Public

    Fast and accurate label-free quantification for small and very large numbers of proteomes

    MannLabs/directlfq’s past year of commit activity
    Jupyter Notebook 46 Apache-2.0 5 6 2 Updated Feb 20, 2025
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