v1.11

HenriquesLab · Nov 13, 2020 · 448849a · 448849a
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diff --git a/Colab_notebooks/Beta notebooks/3D-RCAN_ZeroCostDL4Mic.ipynb b/Colab_notebooks/Beta notebooks/3D-RCAN_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/Beta notebooks/DenoiSeg_2D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/Beta notebooks/DenoiSeg_2D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/CARE_2D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/CARE_2D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/CARE_3D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/CARE_3D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/ChangeLog.txt b/Colab_notebooks/ChangeLog.txt
@@ -1,12 +1,33 @@
-ZeroCostDL4Mic
+----------- ZeroCostDL4Mic -----------
 
 bioRxiv preprint available here:
-https://www.biorxiv.org/content/10.1101/2020.03.20.000133v1
+https://www.biorxiv.org/content/10.1101/2020.03.20.000133v4
+
 
 Latest releases available here:
 /~https://github.com/HenriquesLab/ZeroCostDL4Mic/releases
 
 
+—————————————————————————————————————————————————————————
+ZeroCostDL4Mic v1.11
+
+
+Major changes:
+
+- Addition of Training and Quality Control report PDF export to all official release notebooks
+- Addition of Automatic Version Control to all notebooks, checking whether the user is using the latest release of the notebooks
+- Introduction of a failsafe to avoid overwriting an existing model folder, upon starting a new training session
+- Automatic export of the requirements.txt file, necessary for running the notebooks locally
+
+- U-Net 2D: Improved data loading avoiding extensive usage of RAM when creating patches
+
+- fnet: added validation-split as training parameter
+
+- Beta notebooks: U-Net 2D and Deep-STORM versions of the notebooks allowing model export towards DeepImageJ (thanks, Esti!!!!). NOTE: Deep-STORM DeepImageJ notebook was downgraded to TF1.x for compatibility.
+https://www.biorxiv.org/content/10.1101/799270v2
+
+
+
 —————————————————————————————————————————————————————————
 ZeroCostDL4Mic v1.10
 

diff --git a/Colab_notebooks/CycleGAN_ZeroCostDL4Mic.ipynb b/Colab_notebooks/CycleGAN_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/Deep-STORM_2D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/Deep-STORM_2D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/Latest_ZeroCostDL4Mic_Release.csv b/Colab_notebooks/Latest_ZeroCostDL4Mic_Release.csv
@@ -1 +1 @@
-1.10
+1.11
diff --git a/Colab_notebooks/Noise2Void_2D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/Noise2Void_2D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/Noise2Void_3D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/Noise2Void_3D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/StarDist_2D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/StarDist_2D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/StarDist_3D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/StarDist_3D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/Template_ZeroCostDL4Mic.ipynb b/Colab_notebooks/Template_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/U-Net_2D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/U-Net_2D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/U-Net_3D_ZeroCostDL4Mic.ipynb b/Colab_notebooks/U-Net_3D_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/YOLOv2_ZeroCostDL4Mic.ipynb b/Colab_notebooks/YOLOv2_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/fnet_ZeroCostDL4Mic.ipynb b/Colab_notebooks/fnet_ZeroCostDL4Mic.ipynb
diff --git a/Colab_notebooks/pix2pix_ZeroCostDL4Mic.ipynb b/Colab_notebooks/pix2pix_ZeroCostDL4Mic.ipynb
diff --git a/Tools/Augmentor_ZeroCostDL4Mic.ipynb b/Tools/Augmentor_ZeroCostDL4Mic.ipynb
diff --git a/Tools/Automated_tracking.py b/Tools/Automated_tracking.py