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@Georgakopoulos-Soares-lab

Georgakopoulos-Soares-lab

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  1. MAFin MAFin Public

    CLI tool to process and analyze MAF files ( Multiple alignment format )

    Python 5

  2. ZSeeker ZSeeker Public

    Bioinformatics CLI tool to extract potential Z-DNA forming sequences from fasta files

    Python 3

  3. MAFcounter_hashmaps MAFcounter_hashmaps Public

    MAFcounter is a multi-threaded K-MER frequency counting program designed to work on multiple sequence alignment files

    C++ 3

  4. hdna_rdna_homo_sapiens hdna_rdna_homo_sapiens Public

    Jupyter Notebook 2

  5. dna-quasi-primes dna-quasi-primes Public

    Repo for human quasi prime case study and manuscript for Mouratidis, Konnaris, Chantzi, and Chan et al.

    Jupyter Notebook 1

  6. nullomer_topography nullomer_topography Public

    Jupyter Notebook 1

Repositories

Showing 10 of 26 repositories
  • MAFcounter-pipelines Public

    Pipelines to test scaling of MAF Counter tool and performance against other k-mer counters.

    Georgakopoulos-Soares-lab/MAFcounter-pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 3, 2025
  • MAFcounter Public
    Georgakopoulos-Soares-lab/MAFcounter’s past year of commit activity
    C++ 1 0 0 0 Updated Mar 1, 2025
  • invertiaDB-analysis Public
    Georgakopoulos-Soares-lab/invertiaDB-analysis’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 8, 2025
  • hdna_rdna_homo_sapiens Public
    Georgakopoulos-Soares-lab/hdna_rdna_homo_sapiens’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Feb 7, 2025
  • hairpinDB-Front-End Public

    The front end application of hairpinDB database that stores invert repeat motifs

    Georgakopoulos-Soares-lab/hairpinDB-Front-End’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 6, 2025
  • Quadrupia Public

    Analysis of G-Quadruplexes across the tree of life

    Georgakopoulos-Soares-lab/Quadrupia’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 2, 2025
  • Avoidmers-DNA Public
    Georgakopoulos-Soares-lab/Avoidmers-DNA’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 29, 2025
  • MAFin Public

    CLI tool to process and analyze MAF files ( Multiple alignment format )

    Georgakopoulos-Soares-lab/MAFin’s past year of commit activity
    Python 5 GPL-3.0 0 0 0 Updated Jan 20, 2025
  • mindi Public
    Georgakopoulos-Soares-lab/mindi’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 17, 2024
  • taxonomic_quasi_primes Public

    Repo for the biological analyses performed on taxonomic quasi-prime peptides.

    Georgakopoulos-Soares-lab/taxonomic_quasi_primes’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 15, 2024
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