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.github/workflows
.github/workflows
 
 
.clang-format
.clang-format
 
 
.gitignore
.gitignore
 
 
.pre-commit-config.yaml
.pre-commit-config.yaml
 
 
LICENSE.md
LICENSE.md
 
 
Makefile
Makefile
 
 
README.md
README.md
 
 
aye.h
aye.h
 
 
compile_flags.txt
compile_flags.txt
 
 
defer_return.h
defer_return.h
 
 
expect.c
expect.c
 
 
expect.h
expect.h
 
 
file-format.txt
file-format.txt
 
 
imm_abc.c
imm_abc.c
 
 
imm_abc.h
imm_abc.h
 
 
imm_abc_lprob.c
imm_abc_lprob.c
 
 
imm_abc_lprob.h
imm_abc_lprob.h
 
 
imm_amino.c
imm_amino.c
 
 
imm_amino.h
imm_amino.h
 
 
imm_amino_lprob.c
imm_amino_lprob.c
 
 
imm_amino_lprob.h
imm_amino_lprob.h
 
 
imm_array_size.h
imm_array_size.h
 
 
imm_array_size_field.h
imm_array_size_field.h
 
 
imm_assume.h
imm_assume.h
 
 
imm_cartes.h
imm_cartes.h
 
 
imm_cell.h
imm_cell.h
 
 
imm_clock.c
imm_clock.c
 
 
imm_clock.h
imm_clock.h
 
 
imm_code.c
imm_code.c
 
 
imm_code.h
imm_code.h
 
 
imm_codon.c
imm_codon.c
 
 
imm_codon.h
imm_codon.h
 
 
imm_codon_lprob.c
imm_codon_lprob.c
 
 
imm_codon_lprob.h
imm_codon_lprob.h
 
 
imm_codon_marg.c
imm_codon_marg.c
 
 
imm_codon_marg.h
imm_codon_marg.h
 
 
imm_codon_state.c
imm_codon_state.c
 
 
imm_codon_state.h
imm_codon_state.h
 
 
imm_compiler.h
imm_compiler.h
 
 
imm_container.h
imm_container.h
 
 
imm_ctrans.h
imm_ctrans.h
 
 
imm_dna.c
imm_dna.c
 
 
imm_dna.h
imm_dna.h
 
 
imm_dp.c
imm_dp.c
 
 
imm_dp.h
imm_dp.h
 
 
imm_dp_cfg.h
imm_dp_cfg.h
 
 
imm_dp_safety.c
imm_dp_safety.c
 
 
imm_dp_safety.h
imm_dp_safety.h
 
 
imm_dump.c
imm_dump.c
 
 
imm_dump.h
imm_dump.h
 
 
imm_emis.c
imm_emis.c
 
 
imm_emis.h
imm_emis.h
 
 
imm_eseq.c
imm_eseq.c
 
 
imm_eseq.h
imm_eseq.h
 
 
imm_ex1.c
imm_ex1.c
 
 
imm_ex1.h
imm_ex1.h
 
 
imm_ex2.c
imm_ex2.c
 
 
imm_ex2.h
imm_ex2.h
 
 
imm_ex3.c
imm_ex3.c
 
 
imm_ex3.h
imm_ex3.h
 
 
imm_fmt.c
imm_fmt.c
 
 
imm_fmt.h
imm_fmt.h
 
 
imm_frame_cond.c
imm_frame_cond.c
 
 
imm_frame_cond.h
imm_frame_cond.h
 
 
imm_frame_epsilon.c
imm_frame_epsilon.c
 
 
imm_frame_epsilon.h
imm_frame_epsilon.h
 
 
imm_frame_state.c
imm_frame_state.c
 
 
imm_frame_state.h
imm_frame_state.h
 
 
imm_frame_state_15.c
imm_frame_state_15.c
 
 
imm_frame_state_15.h
imm_frame_state_15.h
 
 
imm_frame_state_24.c
imm_frame_state_24.c
 
 
imm_frame_state_24.h
imm_frame_state_24.h
 
 
imm_frame_state_33.c
imm_frame_state_33.c
 
 
imm_frame_state_33.h
imm_frame_state_33.h
 
 
imm_gencode.c
imm_gencode.c
 
 
imm_gencode.h
imm_gencode.h
 
 
imm_hmm.c
imm_hmm.c
 
 
imm_hmm.h
imm_hmm.h
 
 
imm_htable.h
imm_htable.h
 
 
imm_ipow.h
imm_ipow.h
 
 
imm_likely.h
imm_likely.h
 
 
imm_list.c
imm_list.c
 
 
imm_list.h
imm_list.h
 
 
imm_logaddexp.h
imm_logaddexp.h
 
 
imm_logsum.h
imm_logsum.h
 
 
imm_lprob.c
imm_lprob.c
 
 
imm_lprob.h
imm_lprob.h
 
 
imm_matrix.c
imm_matrix.c
 
 
imm_matrix.h
imm_matrix.h
 
 
imm_matrixf.c
imm_matrixf.c
 
 
imm_matrixf.h
imm_matrixf.h
 
 
imm_matrixi16.c
imm_matrixi16.c
 
 
imm_matrixi16.h
imm_matrixi16.h
 
 
imm_max.h
imm_max.h
 
 
imm_min.h
imm_min.h
 
 
imm_mute_state.c
imm_mute_state.c
 
 
imm_mute_state.h
imm_mute_state.h
 
 
imm_node.c
imm_node.c
 
 
imm_node.h
imm_node.h
 
 
imm_normal_state.c
imm_normal_state.c
 
 

Repository files navigation

imm

Invisible Markov model library.

Install

bash -c "$(curl -fsSL https://git.io/Jz7Oa) -s EBI-Metagenomics/imm"

Development

mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release ..
make
make test

About

Invisible Markov model library.

Resources

Readme

License

MIT license
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Releases 19

v2.2.1 Latest
Mar 8, 2023
+ 18 releases

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