Central repository for containers used in the Microbiome Informatics Team at EMBL - EBI

Name		Name	Last commit message	Last commit date
Latest commit History 115 Commits
antismash/7.1.0.1		antismash/7.1.0.1
assembly_stats		assembly_stats
bash_genomes_pipeline		bash_genomes_pipeline
beav/1.3.0		beav/1.3.0
blast		blast
bwa_eukcc/2.2.1_2.0		bwa_eukcc/2.2.1_2.0
bwa_metabat/2.2.1_2.16		bwa_metabat/2.2.1_2.16
bwa_metabat_concoct/2.2.1_2.16_1.1.0		bwa_metabat_concoct/2.2.1_2.16_1.1.0
bwamem2		bwamem2
cat		cat
checkm		checkm
dada2		dada2
dbcan		dbcan
detect_rrna		detect_rrna
diamond		diamond
dram/v1.3		dram/v1.3
drep		drep
eggnog-mapper_genomes_pipeline		eggnog-mapper_genomes_pipeline
emerald/v0.2.4.1		emerald/v0.2.4.1
eukcc		eukcc
fastp		fastp
filter_contigs		filter_contigs
flye		flye
genome-properties		genome-properties
genomes-catalog-update		genomes-catalog-update
gtdb-tk/2.3.0		gtdb-tk/2.3.0
gunc/v1.0.3		gunc/v1.0.3
hifiadapterfilt		hifiadapterfilt
ideel		ideel
integron_finder/71ee6e0		integron_finder/71ee6e0
interproscan/5.72-103.0		interproscan/5.72-103.0
ips_genomes_pipeline		ips_genomes_pipeline
kegg-pathways-completeness-tool		kegg-pathways-completeness-tool
keggdecoder		keggdecoder
mapseq/v2.1.1b		mapseq/v2.1.1b
mash2nwk		mash2nwk
medaka		medaka
merge_reads		merge_reads
metaWRAP		metaWRAP
miniconda		miniconda
minimap2		minimap2
minimap2_filter		minimap2_filter
mmseqs		mmseqs
owltools		owltools
panaroo		panaroo
pilon		pilon
prodigal		prodigal
prokka		prokka
pseudofinder/v1.1.0		pseudofinder/v1.1.0
pycirclize		pycirclize
python3_scripts_genomes_pipeline		python3_scripts_genomes_pipeline
racon		racon
sanntis		sanntis
sourmash		sourmash
spades		spades
trim_galore		trim_galore
virsorter2		virsorter2
README.md		README.md

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