feat(poetry) Use

.github/workflows/build_and_publish.yml

@@ -13,31 +13,20 @@ jobs:
       - name: Check out git repository
         uses: actions/checkout@v4.1.1
 
-      - name: Set up Python 3.11
+      - name: Set up Python 0
         uses: actions/setup-python@v5
         with:
           python-version: "3.11"
 
-      - name: Install build tools
-        run: >-
-          python -m
-          pip install
-          wheel
-          twine
-          --user
+      - name: Install poetry
+        uses: snok/install-poetry@v1
 
-      - name: Build a binary wheel and a source tarball
-        run: >-
-          python
-          setup.py
-          sdist
-          bdist_wheel
-
-      - name: Publish distribution 📦 to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
-        with:
-          user: __token__
-          password: ${{ secrets.pypi_password }}
+      - name: Build and publish to PYPI
+        run: |
+          poetry publish --build
+        env:
+          GITHUB: 1
+          POETRY_PYPI_TOKEN_PYPI: ${{ secrets.POETRY_PYPI_TOKEN_PYPI }}
 
   push_to_registry:
     name: Push Docker image to Docker Hub

.github/workflows/coveralls.yml

@@ -9,22 +9,18 @@ jobs:
     steps:
       - uses: actions/checkout@v4.1.1
 
-      - name: Set up Python ${{ matrix.python-version}}
+      - name: Set up Python
         uses: actions/setup-python@v5
         with:
           python-version: "3.11"
 
-      - name: Housekeeper Dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install .
-          pip install -r requirements-dev.txt
+      - name: Install and configure Poetry
+        uses: snok/install-poetry@v1
 
-      - name: Coveralls Dependencies
-        run: |
-          pip install pytest-cov coveralls
+      - name: Install dependencies
+        run: poetry install --no-interaction
 
-      - name: Test with pytest & Coveralls
+      - name: Test with Pytest & Coveralls
         run: |
           pytest --cov=housekeeper/
           coveralls

Dockerfile

@@ -6,6 +6,10 @@ RUN addgroup --system nonroot \
 WORKDIR /app
 COPY . /app/
 
-RUN pip install --no-cache-dir .
+RUN pip install poetry
+
+# Install app requirements
+RUN poetry export -f requirements.txt -o requirements.txt --without-hashes
+RUN pip install -r requirements.txt -e .
 
 USER nonroot

pyproject.toml

@@ -1,3 +1,31 @@
+[tool.poetry]
+name = "housekeeper"
+version = "4.13.2"
+description =  "File data orchestrator"
+authors = ["henrikstranneheim <henrik.stranneheim@scilifelab.se>"]
+license = "MIT"
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = "^3.11"
+click = "^8.1.7"
+coloredlogs = "^15.0.1"
+cryptography = "^43.0.1"
+marshmallow = "^3.22.0"
+PyYAML = "^6.0.2"
+SQLAlchemy = "^2.0.34"
+rich = "^13.8.0"
+PyMySQL = "^1.1.1"
+
+[tool.poetry.group.dev.dependencies]
+pre-commit = "^3.8.0"
+pytest = "^8.3.2"
+pytest-mock = "^3.14.0"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
+
 [tool.black]
 line-length = 100