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{is} prepare for rsem#609

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IanSudbery merged 7 commits intomasterCGATOxford/UMI-tools:masterfrom {IS}_prepare-for-rsemCGATOxford/UMI-tools:{IS}_prepare-for-rsemCopy head branch name to clipboardNov 16, 2023

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Commits on Mar 28, 2021

• Created prepare_for_rsem script to make output valid for rsem.

  IanSudbery

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  3482578

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• more sensible naming

  IanSudbery

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Commits on Dec 4, 2021

• Merge branch '{IS}_prepare-for-rsem' of github.com:CGATOxford/UMI-tools

  IanSudbery

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• Fix typo in output code for prepare-for-rsem

  IanSudbery

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Commits on Dec 14, 2021

• Fix exception type in prepare-for-RSEM

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  IanSudbery

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• prepare-for-rsem - edits to fix logging code on failing to find mates

  IanSudbery

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Commits on Dec 28, 2021

• Refactored prepare-for-rsem so that reads are chunked properly, and will find secondary mates of primary reads

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