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heylf committed Sep 26, 2019
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# StoatyDive

[![GitHub](https://img.shields.io/github/tag/heylf/StoatyDive.svg)](/~https://github.com/heylf/StoatyDive) [![Bioconda](https://anaconda.org/bioconda/stoatydive/badges/version.svg)](https://anaconda.org/bioconda/stoatydive)
[![Build Status](https://travis-ci.org/heylf/StoatyDive.svg?branch=master)](https://travis-ci.org/heylf/StoatyDive)
[![GitHub](https://img.shields.io/github/tag/BackofenLab/StoatyDive.svg)](/~https://github.com/BackofenLab/StoatyDive) [![Bioconda](https://anaconda.org/bioconda/stoatydive/badges/version.svg)](https://anaconda.org/bioconda/stoatydive)
[![Build Status](https://travis-ci.org/BackofenLab/StoatyDive.svg?branch=master)](https://travis-ci.org/BackofenLab/StoatyDive)

StoatyDive is a tool to evaluate and classify predicted peak profiles to assess the binding specificity of a protein to its targets.
It can be used for sequencing data such as CLIP-seq or ChIP-Seq, or any other type of peak profile data.
Expand All @@ -20,7 +20,7 @@ conda install stoatydive
### Repository download

```
git clone /~https://github.com/heylf/StoatyDive.git
git clone /~https://github.com/BackofenLab/StoatyDive.git
cd StoatyDive
sudo apt-get install -y r-base
python setup.py install
Expand All @@ -29,7 +29,7 @@ python setup.py install
or

```
/~https://github.com/heylf/StoatyDive/archive/v1.0.3.tar.gz
/~https://github.com/BackofenLab/StoatyDive/archive/v1.1.0.tar.gz
```

Requirements: python >= 3.6, bedtools >= 2.27.1, numpy>=1.13.3, matplotlib>=2.1, scipy >= 1.3, R >= 3.4.4
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