Understanding the output files

The scope of alele calling in taranis is to collect as much information as possible from the sample files and the schema.

For that reason, when taranis is executed, it will create a big number of files, grouped in 3 main different folders.

raw_info

The raw_info folder contains the information fetched from fasta files without doing any kind of grouping. Because of the big number of the files that are generated they are divided into subfolders. This folder could be used to investigate deeply for a specific core gene/allele. The summary folder on the contrary will summarize the same related information to have an overall information about the schema. The graphic folder will have statistics graphics about the schema.

Under the output folder the following directory structure will be created: