Include the version of barcode on date run

BCCDC-PHL · Jul 20, 2023 · ce9c4c6 · ce9c4c6
1 parent d00a856
commit ce9c4c6
Showing 1 changed file with 17 additions and 0 deletions.
diff --git a/modules/effluent.nf b/modules/effluent.nf
@@ -80,6 +80,21 @@ process lineage_freyja {
 //freyja demix --version > "${params.out_dir}/freyja_overall_lineage_summary/barcode_version.log"
 }
 
+process barcode_version {
+
+  tag "Recording Freyja barcode version used"
+  publishDir "${params.out_dir}/freyja_individual_lineage_summaries", mode: 'copy'
+
+  output:
+  file("*.log")
+
+  """
+  echo \$(freyja demix --version) > \$(date +%Y%m%d)_barcode.log
+
+  """
+
+}
+
 process summarize_freyja {
 
   tag "Summarizing relative viral lineage abundances across all samples with Freyja"
@@ -146,6 +161,8 @@ workflow EFFLUENT {
 
   }
 
+  barcode_version()
+
   emit:
   summarize_freyja.out