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welch-lab

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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 399 78

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 108 11

  3. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 35 6

  4. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Jupyter Notebook 29 10

  5. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 28 5

  6. SquiggleNet SquiggleNet Public

    Python 20 5

Repositories

Showing 10 of 27 repositories
  • RcppPlanc Public
    welch-lab/RcppPlanc’s past year of commit activity
    C++ 3 GPL-2.0 1 3 0 Updated Jan 19, 2025
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io’s past year of commit activity
    HTML 1 1,204 0 0 Updated Jan 17, 2025
  • liger Public

    R package for integrating and analyzing multiple single-cell datasets

    welch-lab/liger’s past year of commit activity
    R 399 GPL-3.0 78 21 (2 issues need help) 11 Updated Jan 15, 2025
  • TopoVelo Public
    welch-lab/TopoVelo’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 29, 2024
  • cytosignal Public
    welch-lab/cytosignal’s past year of commit activity
    R 16 1 2 0 Updated Dec 20, 2024
  • PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    welch-lab/PerturbNet’s past year of commit activity
    Jupyter Notebook 29 GPL-3.0 10 2 1 Updated Nov 15, 2024
  • LUMIC Public
    welch-lab/LUMIC’s past year of commit activity
    Python 0 0 0 0 Updated Oct 28, 2024
  • VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    welch-lab/VeloVAE’s past year of commit activity
    Jupyter Notebook 35 BSD-3-Clause 6 6 0 Updated Oct 27, 2024
  • MultiVelo Public

    Multi-omic velocity inference

    welch-lab/MultiVelo’s past year of commit activity
    Python 108 BSD-3-Clause 11 16 0 Updated Oct 23, 2024
  • steamer Public
    welch-lab/steamer’s past year of commit activity
    Python 0 0 0 0 Updated Oct 22, 2024

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