General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Picotti lab data analysis package.

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

A package to perform Random Walk with Restart on different types of networks

Back-end interface for PANDORA /~https://github.com/genular/pandora

IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems

R package for de novo pathway enrichment using KeyPathwayMiner

🍸R version of SConES, a systems-biology approach to GWAS.

A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.

SynergyFinder R package development

Arabidopsis Thaliana TRanscriptionAl Circadian neTwORk, a web based tool developed using the R package shiny for the exploration and analysis of a transcriptional network in Arabidopsis thaliana constituted by circadian and light responsive transcriptional factors and regulators

Analyze enzyme regulation with metabolome data.

Code for my Bioinformatics and Computational Biology MSc Thesis

GISL Toolkit

Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings

A Suite of R Packages for NGS-based Epigenomic Data Analysis.

Method for aligning biological replicate data

A comprehensive repository housing all assignments, original code, projects, and educational materials pertaining to the elective course in Systems Biology.

iLipidome is a novel lipidomic data analysis framework.

Accessory R functions to support DBSolveOptimum