Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
COVID-19 Hospital Impact Model for Epidemics
Epidemiology analysis package
Recognize bio-medical entities from a text corpus
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Race and ethnicity Imputation from Disease history with Deep LEarning
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
Simulating epidemics using Python
June is a framework for agent based modelling in an epidemiological and geographical context.
EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.
Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
Agent-based simulation model for COVID-19 spread in society and patient outcomes
Covid Epidemics Simulation with Simpy
Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".
missing data handing: visualize and impute
Epidemiological weeks calculation based on the US CDC (MMWR) and ISO week numbering systems
[AAMAS 2023] Differentiable Agent-based Epidemiology
Epidemiological modeling framework for pathogen population genetics and evolution.
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