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23 Open 28 Closed
23 Open 28 Closed
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Issues list

suggestion: name output .zip files from batches .sig.zip instead of .zip
#191 opened Jan 20, 2025 by ctb
compute resource guidance
#189 opened Jan 19, 2025 by ctb
could gbsketch ignore additional columns rather than complain?
#187 opened Jan 19, 2025 by ctb
1
gbsketch: output failed accessions to file that can be rerun with gbsketch?
#186 opened Jan 18, 2025 by bluegenes
gbsketch: set default -n based on api_key
#185 opened Jan 18, 2025 by bluegenes
is there a way to handle out-of-memory errors more cleanly?
#182 opened Jan 17, 2025 by ctb
3
more output desired
#174 opened Jan 12, 2025 by ctb
2
what does using multiple CPUs accomplish?
#173 opened Jan 12, 2025 by ctb
how does resuming a batch output job work?
#172 opened Jan 12, 2025 by ctb
7
are there instructions anywhere for using directsketch to sketch all reference genomes under a certain taxonomic node?
#166 opened Dec 26, 2024 by ctb
3
Ctrl-C doesn't seem to be working anymore?
#165 opened Dec 26, 2024 by bluegenes
GCF vs GCA entries fyi
#129 opened Oct 24, 2024 by bluegenes
enable appending to existing zipfiles
#123 opened Oct 16, 2024 by bluegenes
compare sketch parameter parsing, generation with sourmash python layer strategies + testing
#117 opened Oct 9, 2024 by bluegenes
consider using standardized MultiCollection if/when it exists
#108 opened Oct 4, 2024 by bluegenes
copy batched zips to a single zipfile?
#107 opened Oct 1, 2024 by bluegenes
1
try forcing a checksum error for gbsketch to better test checksum reporting
#105 opened Sep 30, 2024 by bluegenes
support translation during sketching?
#58 opened Jun 14, 2024 by bluegenes
note need to do maturin sdist build in a clean directory
#57 opened Jun 14, 2024 by ctb
chunk urlsketch downloads to avoid keeping entire file in memory
#47 opened Jun 3, 2024 by bluegenes
automatically include accession in name?
#42 opened May 21, 2024 by bluegenes
allow other compression formats
#40 opened May 21, 2024 by bluegenes
1
initial benchmarking
#22 opened May 9, 2024 by bluegenes
1
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