fix: read quantification #22
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cmeesters
reviewed
Jun 19, 2024
workflow/Snakefile
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| @@ -129,7 +129,7 @@ rule sam_stats: | |||
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| rule count_reads: | |||
| input: | |||
| bam=rules.sam_index.output.ibam, | |||
| bam=rules.map_reads.output, # use unsorted .bam files; minimap2 does not create .bam -> new input needed; also filtering may be necessary (cutadapt) | |||
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Please update the comment: Just state that compressed output will not be generated. The filtering is some kind of TODO, which we ought to discuss
cmeesters
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Jun 19, 2024
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