fix(param): updated profile for human readable times

snakemake-workflows · Mar 6, 2024 · a0395a2 · a0395a2
1 parent 65862e0
commit a0395a2
Showing 1 changed file with 12 additions and 13 deletions.
diff --git a/workflow/profile/config.yaml b/workflow/profile/config.yaml
@@ -1,36 +1,35 @@
+default-resources:
+    slurm_account: "m2_zdvhpc"
+    slurm_partition: "smp"
+
 set-resources:
     build_minimap_index:
         cpus_per_task: 4
         mem_mb_per_cpu: 3600
-        partition: smp
-        runtime: 60
+        runtime: "1h"
 
     map_reads:
-        cpus_per_task: 20
+        cpus_per_task: 40
         mem_mb_per_cpu: 1800
-        partition: smp
-        runtime: 60
+        runtime: "3h"
+        slurm_partition: "parallel"
 
     sam_sort:
         cpus_per_task: 8
         mem_mb_per_cpu: 1800
-        partition: smp
-        runtime: 30
+        runtime: "30m"
 
     sam_index:
         cpus_per_task: 8
         mem_mb_per_cpu: 1800
-        partition: smp
-        runtime: 30
+        runtime: "30m"
 
     count_reads:
         cpus_per_task: 8
         mem_mb_per_cpu: 1800
-        partition: smp
-        runtime: 60
+        runtime: "1h"
 
     de_analysis:
         cpus_per_task: 4
         mem_mb_per_cpu: 5000
-        partition: smp
-        runtime: 60
+        runtime: "1h"