fix(env): fixed env for slurm and fs plugins

snakemake-workflows · Mar 6, 2024 · 65862e0 · 65862e0
1 parent 61f36e9
commit 65862e0
Showing 1 changed file with 11 additions and 3 deletions.
diff --git a/workflow/envs/env.yml b/workflow/envs/env.yml
@@ -3,6 +3,12 @@ channels:
     - r
     - bioconda
 dependencies:
+    - python>=3.12.1
+    - snakemake>=8.4.8
+    - snakemake-executor-plugin-slurm
+    - snakemake-storage-plugin-fs
+    - snakemake-interface-common
+    - snakemake-interface-storage-plugins
     - bioconductor-genomicfeatures
     - bioconductor-drimseq
     - bioconductor-edger
@@ -15,7 +21,9 @@ dependencies:
     - pysam
     - pandas
     - salmon=1.9.0
-    - snakemake>=8.0.1
-    - snakemake-executor-plugin-slurm-jobstep
-    - snakemake-executor-plugin-slurm
     - nanoplot
+    - matplotlib
+    - seaborn
+    - pydeseq2=0.4.4
+    - anndata>=0.8.0
+