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s4vd

This is a fork of the Sill-Kaiser implementation of sparse singular value biclustering methods for R1 by Lee, Shen, Huange, and Marron2.

We've tweaked the package for performance using, among other tricks, the irlba3 fast partial singular value decomposition method of Baglama and Reichel4 and the foreach package 5.

More details on the changes are outlined in detail here /~https://github.com/bwlewis/s4vd/blob/master/vignettes/s4vdp4.pdf

References

  1. http://cran.r-project.org/web/packages/s4vd
  2. Biclustering via Sparse Singular Value Decomposition, M. Lee, H. Shen, J. Huang, J. S. Marron, Biometrics 66, pp. 1087-1095, December 2010.
  3. http://cran.r-project.org/web/packages/irlba
  4. Augmented Implicitly Restarted Lanczos Bidiagonalization Methods, J. Baglama and L. Reichel, SIAM J. Sci. Comput. 2005.
  5. http://cran.r-project.org/web/packages/foreach

Installation

library(devtools)                  
install_github('mwsill/s4vd')

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