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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 647 369

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 313 81

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 312 81

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 147 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 185 repositories
  • spreadkernel Public

    Small library that smears non-uniformly distributed points onto a uniform grid, via a user supplied spreading kernel. This project is supported by the Simons Foundation's Flatiron Institute.

    flatironinstitute/spreadkernel’s past year of commit activity
    C++ 0 0 0 0 Updated Jan 22, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 647 GPL-2.0 369 78 (1 issue needs help) 10 Updated Jan 22, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 22, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 22, 2025
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Jan 22, 2025
  • jenkins-webserver-template Public

    Template repo to serve as recipient of jenkins documentation build pushes

    flatironinstitute/jenkins-webserver-template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 22, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 6 MIT 0 17 1 Updated Jan 22, 2025
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 1 0 0 Updated Jan 22, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 40 Apache-2.0 1 19 3 Updated Jan 22, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 85 MIT 8 101 3 Updated Jan 21, 2025
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