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695 Open 1,034 Closed
695 Open 1,034 Closed
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Issues list

sourmash tax question - genus level matches?
#3497 opened Jan 17, 2025 by jodyphelan
3
adjust release process to produce clean sdists
#3496 opened Jan 16, 2025 by ctb
should we use polars in sourmash to read manifests and picklists?
#3495 opened Jan 15, 2025 by ctb
downloading & sketching genomes by NCBI taxonomic hierarchy fyi Information that is interesting or useful
#3487 opened Jan 13, 2025 by ctb
1
think about how to build NCBI tax better & combine NCBI euk + GTDB taxonomies
#3486 opened Jan 13, 2025 by ctb
use polars to go from SRA accessions to run identifiers code herein lies code fyi Information that is interesting or useful
#3485 opened Jan 12, 2025 by ctb
1
Sourmash ONT taxonomy questions
#3480 opened Jan 10, 2025 by peterdoug
2
further unify moltype handling to facilitate adding additional types
#3479 opened Jan 9, 2025 by bluegenes
content search of AllTheBacteria with selected GTDB genomes fyi Information that is interesting or useful tutorial links to tutorials
#3478 opened Jan 9, 2025 by ctb
consider supporting default name in sourmash sketch
#3477 opened Jan 9, 2025 by ctb
notes on optimization fyi Information that is interesting or useful
#3475 opened Jan 8, 2025 by ctb
revindex database locations on farm fyi Information that is interesting or useful
#3467 opened Jan 2, 2025 by ctb
avoid rocksdb recompiles?
#3466 opened Jan 2, 2025 by ctb
two revindex/RocksDB questions that I would like to investigate
#3462 opened Dec 29, 2024 by ctb
update betterplot plugin to allow empty names (and then use filenames)
#3461 opened Dec 28, 2024 by ctb
update betterplot plugin to give better error message on various input issues
#3460 opened Dec 28, 2024 by ctb
consider sketching the hungate collection
#3459 opened Dec 28, 2024 by ctb
fix abundhist plugin to autodetect flat sketches and complain
#3458 opened Dec 28, 2024 by ctb
min python version for screed on conda-forge: should I just set at py310?
#3455 opened Dec 25, 2024 by ctb
document and test skipmer moltypes
#3449 opened Dec 20, 2024 by bluegenes
validate amino acid inputs rust
#3447 opened Dec 20, 2024 by bluegenes
switch to using importlib.metadata instead of pkg_resources
#3440 opened Dec 16, 2024 by ctb
database page update thoughts
#3421 opened Dec 7, 2024 by ctb
5 tasks
regular test failures on py310?
#3410 opened Dec 2, 2024 by ctb
add rust sig building utilities rust
#3406 opened Nov 20, 2024 by bluegenes
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