Support for PacBio HiFi reads

akikuno · Oct 30, 2024 · 6977334 · 6977334
1 parent f5f8edd
commit 6977334
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/DAJIN2/core/preprocess/mapping.py b/src/DAJIN2/core/preprocess/mapping.py
@@ -116,7 +116,7 @@ def generate_sam(
 
     for path_fasta in paths_fasta:
         name_fasta = Path(path_fasta).stem
-        presets = ["map-ont", "splice", "sr"]
+        presets = ["map-ont", "map-hifi", "sr"]
 
         path_sam_directory = Path(ARGS.tempdir, name, "sam", name_fasta)
         path_sam_directory.mkdir(parents=True, exist_ok=True)