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Disk quota exceeded on SCG (due to nobody user) #149

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leepc12 opened this issue Nov 8, 2021 · 0 comments · Fixed by #151
Closed

Disk quota exceeded on SCG (due to nobody user) #149

leepc12 opened this issue Nov 8, 2021 · 0 comments · Fixed by #151

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@leepc12
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leepc12 commented Nov 8, 2021

2021-11-03 11:34:33,803 cromwell-system-akka.dispatchers.backend-dispatcher-77 ERROR - BackgroundConfigAsyncJobExecutionActor [UUID(ad334f54)atac.align:0:2]: Error attempting to Execute
java.io.IOException: Disk quota exceeded

When Cromwell makes output directories, the ownership is not correctly propagated to each task's directory.
And this results in the Disk quota error.

(base) -bash-4.2$ ls -l
total 232
drwxrwsrwx 4 leepc12 scg_lab_akundaje   4096 Nov  3 11:33 call-align
drwxrwsrwx 4 leepc12 scg_lab_akundaje   4096 Nov  3 11:33 call-align_mito
drwxrwsrwx 5 leepc12 scg_lab_akundaje   4096 Nov  3 11:33 call-read_genome_tsv
-rw-rw-r-- 1 leepc12 scg_lab_akundaje 222449 Nov  3 11:39 metadata.json
(base) -bash-4.2$ ls -l call-align
total 8
drwxrwsrwx 6 leepc12 nobody 4096 Nov  3 11:33 shard-0
drwxrwsrwx 5 leepc12 nobody 4096 Nov  3 11:35 shard-1
This was referenced Nov 10, 2021
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