diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index d86cb28..22732ea 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -33,7 +33,7 @@ jobs:
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
       - name: Build with Cython
         id: build
-        run: echo "::set-output name=version::$(python pack_molecular.py)"
+        run: echo "::set-output name=version::$(python scripts/pack_molecular.py)"
       - name: Upload windows zip
         uses: actions/upload-artifact@v2
         with:
@@ -62,7 +62,7 @@ jobs:
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
       - name: Build with Cython
         id: build
-        run: echo "::set-output name=version::$(python pack_molecular.py)"
+        run: echo "::set-output name=version::$(python scripts/pack_molecular.py)"
       - name: Upload linux zip
         uses: actions/upload-artifact@v2
         with:
@@ -93,7 +93,7 @@ jobs:
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
       - name: Build with Cython
         id: build
-        run: echo "::set-output name=version::$(python pack_molecular.py)"
+        run: echo "::set-output name=version::$(python scripts/pack_molecular.py)"
       - name: Upload mac zip
         uses: actions/upload-artifact@v2
         with:
diff --git a/build_molecular.py b/scripts/build_molecular.py
similarity index 100%
rename from build_molecular.py
rename to scripts/build_molecular.py
diff --git a/pack_molecular.py b/scripts/pack_molecular.py
similarity index 100%
rename from pack_molecular.py
rename to scripts/pack_molecular.py
diff --git a/run_blender.py b/scripts/run_blender.py
similarity index 100%
rename from run_blender.py
rename to scripts/run_blender.py