Rapid large-scale prokaryote pan genome analysis
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Improve the quality of a denovo assembly by scaffolding and gap filling
Multilocus sequence typing by blast using the schemes from PubMLST
A set of tools to analyse the output from TraDIS analyses
A straightforward and complete next-generation sequencing read simulator
Copy number estimation of highly duplicated sequences
A framework for SEQuencing data analysis PIPElines.
TnSeq data processing workflow
A Platform for Epidemiological Investigation and Comparative Genomic Analysis
Ralstonia eutropha BarSeq analysis
Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]
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