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next-generation-sequencing

Here are 13 public repositories matching this topic...

jvarkit

lindenb / jvarkit

Java utilities for Bioinformatics

java science bioinformatics genomics biology ngs next-generation-sequencing

Updated Feb 28, 2025
Java

sanger-pathogens / Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Jun 15, 2024
Java

xjtu-omics / Mako

A graph-based pattern growth approach for CSV discovery

graph-algorithms next-generation-sequencing structral-variation pattern-growth complex-structural-variation

Updated Aug 3, 2021
Java

dmyersturnbull / bioio

Micro-libraries for reading and writing genomic sequence data in various formats.

bioinformatics genomics genome gff3 ngs next-generation-sequencing vcf genbank fasta gtf bed ucsc gvf

Updated Jan 29, 2024
Java

jiajunhe98 / Gene-Assembing-Program

A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence

gui ngs next-generation-sequencing de-bruijn-graphs

Updated Oct 9, 2020
Java

mcgml / BoltImport

VCF Neo4j import tool (WebSocket)

bioinformatics neo4j next-generation-sequencing

Updated Sep 12, 2016
Java

gokalpcelik / ROHMMCLI

ROHMMCLI - Flexible HMM based homozygosity predictor.

next-generation-sequencing science-research genotyping homozygosity

Updated Oct 5, 2023
Java

mcgml / SoftClipPCRPrimer

Tool for soft-clipping PCR primers based on alignment location

bioinformatics next-generation-sequencing

Updated Oct 5, 2022
Java

BCCDC-PHL / sequencing-runs-service

A web service for providing info about sequencing runs.

spring-boot rest-api next-generation-sequencing data-integration

Updated May 8, 2023
Java

theLongLab / PRESM

Personalized reference editor for somatic mutation discovery

bioinformatics somatic-variants next-generation-sequencing cancer-genomics somatic-mutations presm

Updated Dec 2, 2022
Java

mcgml / AmpliconRealigner

Tool for realigning soft-clipped bases from amplicon reads

bioinformatics next-generation-sequencing indel-discovery

Updated Oct 5, 2022
Java

lindenb / igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

visualization bioinformatics genomics next-generation-sequencing sequence

Updated Jan 11, 2022
Java

mcgml / SparkAdapterTrimmer

High performance NGS read trimmer

bioinformatics spark next-generation-sequencing

Updated Jun 2, 2017
Java

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