AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
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Nov 18, 2023 - Python
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fungi
Here are 18 public repositories matching this topic...
creating hybrid-gene phylogenetic trees for diversity analyses
python diversity bioinformatics python3 phylogenetic-trees phylogenetics microbiology microbiome fungi fungal microbial-ecology
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Aug 23, 2022 - Python
Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
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Jun 7, 2022 - Python
Domingo Fermenter software source code
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Aug 28, 2024 - Python
A spatially explicit trait- and individual-based microbial systems modelling framework
enzyme genome biology trait decomposition microbiome fungi bacteria omics ecology community-ecology fungus soil microorganism individual-based-modelling litter tradeoff dement dementpy trait-based-modelling
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Aug 16, 2024 - Python
Fungal Identification Pipeline
taxonomy fungi species-delimitation phylogenetic-tree species-identification multigene sequence-validation
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Jan 16, 2025 - Python
Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.
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Mar 31, 2022 - Python
GenBank Record downloader for taxonomists
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Nov 19, 2024 - Python
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
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Jun 7, 2022 - Python
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
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Jan 16, 2023 - Python
Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.
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Feb 22, 2021 - Python
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
bioinformatics python3 bioinformatics-pipeline fungi genome-assembly-evaluation bioinformatics-algorithms single-cell-genomics eukaryotes bioinformatics-tool
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May 9, 2024 - Python
Antimicrobial activity prediction for fungal effector candidates
machine-learning annotation proteins structures prediction fungi effector antimicrobial-peptides pdb-files antimicrobial
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Dec 19, 2024 - Python
Script python permettant de télécharger les séquences de la base de donnée JGI.
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May 29, 2020 - Python
Assemblies, MATA/MATB regions and source data from Peris et al 2022
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Apr 16, 2024 - Python
A small pipeline to analyse marker data into a phylogeny
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Nov 25, 2020 - Python
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