From a0395a2e67bdc7c4697f312e48170d9f8829d680 Mon Sep 17 00:00:00 2001 From: cmeesters Date: Wed, 6 Mar 2024 10:43:17 +0100 Subject: [PATCH] fix(param): updated profile for human readable times --- workflow/profile/config.yaml | 25 ++++++++++++------------- 1 file changed, 12 insertions(+), 13 deletions(-) diff --git a/workflow/profile/config.yaml b/workflow/profile/config.yaml index b2852ae..1f60600 100644 --- a/workflow/profile/config.yaml +++ b/workflow/profile/config.yaml @@ -1,36 +1,35 @@ +default-resources: + slurm_account: "m2_zdvhpc" + slurm_partition: "smp" + set-resources: build_minimap_index: cpus_per_task: 4 mem_mb_per_cpu: 3600 - partition: smp - runtime: 60 + runtime: "1h" map_reads: - cpus_per_task: 20 + cpus_per_task: 40 mem_mb_per_cpu: 1800 - partition: smp - runtime: 60 + runtime: "3h" + slurm_partition: "parallel" sam_sort: cpus_per_task: 8 mem_mb_per_cpu: 1800 - partition: smp - runtime: 30 + runtime: "30m" sam_index: cpus_per_task: 8 mem_mb_per_cpu: 1800 - partition: smp - runtime: 30 + runtime: "30m" count_reads: cpus_per_task: 8 mem_mb_per_cpu: 1800 - partition: smp - runtime: 60 + runtime: "1h" de_analysis: cpus_per_task: 4 mem_mb_per_cpu: 5000 - partition: smp - runtime: 60 + runtime: "1h"