diff --git a/workflow/profile/config.yaml b/workflow/profile/config.yaml index b2852ae..1f60600 100644 --- a/workflow/profile/config.yaml +++ b/workflow/profile/config.yaml @@ -1,36 +1,35 @@ +default-resources: + slurm_account: "m2_zdvhpc" + slurm_partition: "smp" + set-resources: build_minimap_index: cpus_per_task: 4 mem_mb_per_cpu: 3600 - partition: smp - runtime: 60 + runtime: "1h" map_reads: - cpus_per_task: 20 + cpus_per_task: 40 mem_mb_per_cpu: 1800 - partition: smp - runtime: 60 + runtime: "3h" + slurm_partition: "parallel" sam_sort: cpus_per_task: 8 mem_mb_per_cpu: 1800 - partition: smp - runtime: 30 + runtime: "30m" sam_index: cpus_per_task: 8 mem_mb_per_cpu: 1800 - partition: smp - runtime: 30 + runtime: "30m" count_reads: cpus_per_task: 8 mem_mb_per_cpu: 1800 - partition: smp - runtime: 60 + runtime: "1h" de_analysis: cpus_per_task: 4 mem_mb_per_cpu: 5000 - partition: smp - runtime: 60 + runtime: "1h"