InXalizer silent failure

[genegolts]

Hello,
I have install all of the dependencies and was able to kick off inxalizer with these parameters :
-la clone -r $REF -scn 2 -vn 1000 -sa linear -t 8 -o $myOutput -vb 1

It runs for several hours, creates a clone.vcf file of ~2.6 million lines, but then dies. The stdout ends with the following:

InXalizer: error: [Errno 2] No such file or directory: '/rnd/users/ggoltsman/JIRA/PIP-4700.in-silico_NA1278_mutants/XomeBlender/Fatal'

It seems like some intermediate dependency fails to be generated here. Please advice.

p.s. my input bam file is sorted and indexed with samtools v1.15.1

[rsemeraro]

Hello,
could you pass me the bam file or a subsampled version of the same, to make some tests? Thanks.