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ExampleInput
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Chr Start End Ref Alt QUAL SampleName CL0033_B_P.GT TotalCoverage RefCoverage VarCoverage Variant Allele Freq
chr1 2488153 2488153 A G 1206.77 CL0033_B_P `1/1 36 0 36 1.00
chr1 2494330 2494330 G A 626.77 CL0033_B_P `0/1 69 41 28 0.41
chr1 10318652 10318652 C G 1890.77 CL0033_B_P `0/1 206 121 85 0.41
chr1 10435324 10435324 C A 1874.77 CL0033_B_P `0/1 171 96 75 0.44
chr1 11205058 11205058 C T 4400.77 CL0033_B_P `1/1 136 0 136 1.00
chr1 11288758 11288758 G A 3200.77 CL0033_B_P `1/1 101 0 101 1.00
chr1 11301714 11301714 A G 1787.77 CL0033_B_P `1/1 62 0 62 1.00
chr1 11489678 11489678 A G 3582.77 CL0033_B_P `0/1 316 176 140 0.44
chr1 16256007 16256007 T C 5202.77 CL0033_B_P `1/1 155 0 155 1.00
chr1 16259813 16259813 A G 4870.77 CL0033_B_P `1/1 159 0 159 1.00
chr1 16265904 16265904 T A 2268.77 CL0033_B_P `0/1 172 90 82 0.48
chr1 17380497 17380497 G T 483.77 CL0033_B_P `1/1 16 0 16 1.00
chr1 19027239 19027239 A G 248.77 CL0033_B_P `0/1 27 16 11 0.41
chr1 20915701 20915701 A C 2761.77 CL0033_B_P `1/1 84 0 84 1.00
chr1 20916791 20916791 A G 2485.77 CL0033_B_P `1/1 72 0 72 1.00
chr1 25277982 25277982 C T 3622.77 CL0033_B_P `0/1 332 188 144 0.43
chr1 40363054 40363054 G C 6408.77 CL0033_B_P `1/1 200 0 200 1.00
chr1 45800156 45800156 C T 566.77 CL0033_B_P `0/1 48 25 23 0.48
chr1 46870761 46870761 C A 5538.77 CL0033_B_P `1/1 176 0 176 1.00
chr1 47685455 47685455 T C 250.78 CL0033_B_P `1/1 8 0 8 1.00
chr1 47799639 47799639 G C 119.77 CL0033_B_P `0/1 18 12 6 0.33
chr1 55523033 55523033 A G 869.77 CL0033_B_P `1/1 27 0 27 1.00
chr1 55524197 55524197 A G 532.77 CL0033_B_P `0/1 53 31 22 0.42
chr1 55524237 55524237 G A 347.77 CL0033_B_P `0/1 40 25 15 0.38
chr1 55529187 55529187 G A 1646.77 CL0033_B_P `1/1 51 0 51 1.00
chr1 65303659 65303659 C T 2436.77 CL0033_B_P `0/1 159 74 85 0.53
chr1 65310489 65310489 T C 2741.77 CL0033_B_P `1/1 95 0 95 1.00
chr1 65335062 65335062 A G 1126.77 CL0033_B_P `0/1 99 50 49 0.49
chr1 82173048 82173048 C T 15161.77 CL0033_B_P `1/1 457 1 456 1.00
chr1 85742012 85742012 G C 65.77 CL0033_B_P `0/1 9 5 4 0.44
chr1 98039419 98039419 C T 1930.77 CL0033_B_P `0/1 180 103 77 0.43
chr1 98348885 98348885 G A 4543.77 CL0033_B_P `0/1 354 176 178 0.50
chr1 110201699 110201699 T C 18153.77 CL0033_B_P `1/1 531 0 531 1.00
chr1 110210780 110210780 C G 377.77 CL0033_B_P `1/1 12 0 12 1.00
chr1 110211956 110211956 C T 2670.77 CL0033_B_P `0/1 277 164 113 0.41
chr1 110260742 110260742 T C 1574.77 CL0033_B_P `0/1 146 76 70 0.48
chr1 110300441 110300441 G A 5042.77 CL0033_B_P `1/1 157 0 157 1.00
chr1 113455099 113455099 G A 5182.77 CL0033_B_P `0/1 399 198 201 0.50
chr1 113456546 113456546 A T 5624.77 CL0033_B_P `0/1 467 252 215 0.46
chr1 114948281 114948281 A G 7039.77 CL0033_B_P `1/1 215 0 215 1.00
chr1 120458004 120458004 A T 718.77 CL0033_B_P `0/1 44 17 27 0.61
chr1 120479908 120479908 G A 482.77 CL0033_B_P `0/1 44 23 21 0.48
chr1 120612006 120612006 G A 75.77 CL0033_B_P `0/1 11 7 4 0.36
chr1 144852390 144852390 C T 854.77 CL0033_B_P `0/1 104 69 35 0.34
chr1 144852435 144852435 G A 451.77 CL0033_B_P `0/1 104 80 24 0.23
chr1 144852476 144852476 T C 1029.77 CL0033_B_P `0/1 90 50 40 0.44
chr1 144854180 144854180 T C 506.77 CL0033_B_P `0/1 244 205 39 0.16
chr1 144854528 144854528 A G 959.77 CL0033_B_P `0/1 298 255 43 0.14
chr1 144854537 144854537 T C 1019.77 CL0033_B_P `0/1 321 275 46 0.14
chr1 144854581 144854581 T C 589.77 CL0033_B_P `0/1 326 280 46 0.14
chr1 144854594 144854594 G T 1052.77 CL0033_B_P `0/1 328 282 46 0.14
chr1 144854597 144854597 T C 7516.77 CL0033_B_P `0/1 322 130 192 0.60
chr1 144854598 144854598 C T 5310.77 CL0033_B_P `0/1 318 176 142 0.45
chr1 144855812 144855812 T C 53.77 CL0033_B_P `0/1 53 45 8 0.15
chr1 144855866 144855866 A G 224.77 CL0033_B_P `0/1 55 43 12 0.22
chr1 144856888 144856888 C T 127.77 CL0033_B_P `0/1 37 29 8 0.22
chr1 144859929 144859929 C T 199.77 CL0033_B_P `0/1 64 51 13 0.20
chr1 144865850 144865850 G T 3372.77 CL0033_B_P `0/1 256 134 122 0.48
chr1 144866643 144866643 G A 1950.77 CL0033_B_P `0/1 159 86 73 0.46
chr1 144866662 144866662 T C 2015.77 CL0033_B_P `0/1 165 90 75 0.45
chr1 144866688 144866688 G A 755.77 CL0033_B_P `0/1 132 97 35 0.27
chr1 144868170 144868170 C T 633.77 CL0033_B_P `0/1 74 47 27 0.36
chr1 144871738 144871738 C A 1064.77 CL0033_B_P `0/1 64 34 30 0.47
chr1 144871755 144871755 A T 1034.77 CL0033_B_P `0/1 66 38 28 0.42
chr1 144871782 144871782 A G 822.77 CL0033_B_P `0/1 64 33 31 0.48
chr1 144873887 144873887 C T 2148.77 CL0033_B_P `0/1 194 115 79 0.41
chr1 144873963 144873963 T - 1471.73 CL0033_B_P `0/1 233 176 57 0.24
chr1 144874760 144874760 T C 1889.77 CL0033_B_P `0/1 145 76 69 0.48
chr1 144874815 144874815 T C 275.77 CL0033_B_P `0/1 107 85 22 0.21
chr1 144877176 144877176 C T 1826.77 CL0033_B_P `0/1 189 117 72 0.38
chr1 144879090 144879090 T C 528.77 CL0033_B_P `0/1 125 97 28 0.22
chr1 144879264 144879264 A G 3359.77 CL0033_B_P `0/1 197 68 129 0.65
chr1 144879375 144879375 T C 3061.77 CL0033_B_P `0/1 253 126 127 0.50
chr1 144880814 144880814 G A 414.77 CL0033_B_P `0/1 102 81 21 0.21
chr1 144881583 144881583 A G 419.77 CL0033_B_P `0/1 73 52 21 0.29
chr1 144882581 144882581 A G 2136.77 CL0033_B_P `0/1 204 110 94 0.46
chr1 144882823 144882823 C T 5383.77 CL0033_B_P `0/1 386 188 198 0.51
chr1 144886197 144886197 A T 2538.77 CL0033_B_P `0/1 157 63 94 0.60
chr1 144909956 144909956 G A 1737.77 CL0033_B_P `0/1 321 237 84 0.26
chr1 144912153 144912153 A G 4900.77 CL0033_B_P `1/1 166 0 166 1.00
chr1 144912233 144912233 C T 1731.77 CL0033_B_P `0/1 140 71 69 0.49
chr1 144915561 144915561 G A 3144.77 CL0033_B_P `0/1 219 99 120 0.55
chr1 144915624 144915624 G A 1326.77 CL0033_B_P `0/1 128 76 52 0.41
chr1 144916676 144916676 C T 1430.77 CL0033_B_P `0/1 352 275 77 0.22
chr1 144916748 144916748 C G 2391.77 CL0033_B_P `0/1 214 119 95 0.44
chr1 144917546 144917546 A G 2188.77 CL0033_B_P `0/1 141 64 77 0.55
chr1 144917828 144917828 A - 1588.73 CL0033_B_P `0/1 239 176 63 0.26
chr1 144917841 144917841 T C 2732.77 CL0033_B_P `0/1 241 124 117 0.49
chr1 144918957 144918957 T A 3208.77 CL0033_B_P `0/1 274 147 127 0.46
chr1 144922523 144922523 C T 2013.77 CL0033_B_P `0/1 384 287 97 0.25
chr1 144922583 144922583 G A 6281.77 CL0033_B_P `0/1 506 262 244 0.48
chr1 144930596 144930596 C A 1901.77 CL0033_B_P `0/1 128 59 69 0.54
chr1 144930940 144930940 T C 3723.77 CL0033_B_P `0/1 262 129 133 0.51
chr1 144931330 144931330 C T 3925.77 CL0033_B_P `0/1 315 167 148 0.47
chr1 144931392 144931392 G A 3499.77 CL0033_B_P `0/1 283 144 139 0.49
chr1 144931581 144931581 C G 1299.77 CL0033_B_P `0/1 292 226 66 0.23
chr1 144952207 144952207 C T 65.77 CL0033_B_P `0/1 21 16 5 0.24
chr1 144994658 144994658 C A 2075.77 CL0033_B_P `0/1 150 70 80 0.53
chr1 145075683 145075683 C T 173.77 CL0033_B_P `0/1 53 42 11 0.21
chr1 145075775 145075775 G A 106.77 CL0033_B_P `0/1 75 64 11 0.15
chr1 145075854 145075854 G C 713.77 CL0033_B_P `0/1 58 32 26 0.45
chr1 145532549 145532549 T C 5817.77 CL0033_B_P `1/1 175 0 175 1.00
chr1 145533175 145533175 T C 573.77 CL0033_B_P `0/1 45 23 22 0.49
chr1 146672906 146672906 C T 10690.77 CL0033_B_P `1/1 332 0 332 1.00
chr1 147091416 147091416 G A 843.77 CL0033_B_P `0/1 115 80 35 0.30
chr1 147091689 147091689 G A 1421.77 CL0033_B_P `0/1 121 65 56 0.46
chr1 147091972 147091972 C T 747.77 CL0033_B_P `0/1 72 40 32 0.44
chr1 150808889 150808889 C G 3443.77 CL0033_B_P `0/1 250 124 126 0.50
chr1 156848995 156848995 C T 2379.77 CL0033_B_P `1/1 72 0 72 1.00
chr1 161212569 161212569 G A 12311.77 CL0033_B_P `1/1 378 0 378 1.00
chr1 161286813 161286813 T - 49.73 CL0033_B_P `0/1 80 66 14 0.17
chr1 161289224 161289224 T - 154.73 CL0033_B_P `0/1 109 88 21 0.19
chr1 161304439 161304439 A G 221.8 CL0033_B_P `1/1 7 0 7 1.00
chr1 161315077 161315077 T C 5263.77 CL0033_B_P `0/1 370 184 186 0.50
chr1 161332092 161332092 T - 608.73 CL0033_B_P `0/1 284 216 68 0.24
chr1 161332554 161332554 A G 570.77 CL0033_B_P `0/1 115 93 22 0.19
chr1 161332557 161332557 G A 544.77 CL0033_B_P `0/1 111 92 19 0.17
chr1 161332569 161332569 C G 420.77 CL0033_B_P `0/1 105 88 17 0.16
chr1 161332573 161332573 C G 417.77 CL0033_B_P `0/1 101 84 17 0.17
chr1 161332575 161332575 C G 420.77 CL0033_B_P `0/1 97 82 15 0.15
chr1 161332577 161332577 G A 336.77 CL0033_B_P `0/1 97 84 13 0.13
chr1 161332582 161332582 T C 132.77 CL0033_B_P `0/1 94 86 8 0.09
chr1 164529120 164529120 G A 225.77 CL0033_B_P `0/1 24 13 11 0.46
chr1 171308832 171308832 A G 3373.77 CL0033_B_P `0/1 268 144 124 0.46
chr1 177431168 177431168 T C 4958.77 CL0033_B_P `0/1 339 159 180 0.53
chr1 181331833 181331833 G A 9853.77 CL0033_B_P `1/1 309 0 309 1.00
chr1 182544676 182544676 G C 1444.77 CL0033_B_P `0/1 115 62 53 0.46
chr1 182551337 182551337 A C 1457.77 CL0033_B_P `0/1 110 55 55 0.50
chr1 182554557 182554557 C T 2711.77 CL0033_B_P `0/1 198 98 100 0.51
chr1 186643768 186643768 A G 2429.77 CL0033_B_P `0/1 194 106 88 0.45
chr1 201012597 201012597 G A 791.77 CL0033_B_P `0/1 52 23 29 0.56
chr1 201038687 201038687 A G 738.77 CL0033_B_P `0/1 64 34 30 0.47
chr1 201047075 201047075 A G 240.77 CL0033_B_P `0/1 24 13 11 0.46
chr1 201047111 201047111 A G 359.77 CL0033_B_P `0/1 33 19 14 0.42
chr1 201052310 201052310 A T 1374.77 CL0033_B_P `0/1 64 29 35 0.55
chr1 201052312 201052312 A C 1374.77 CL0033_B_P `0/1 67 30 37 0.55
chr1 201334382 201334382 G A 4142.77 CL0033_B_P `1/1 129 0 129 1.00
chr1 204438334 204438334 C T 3615.77 CL0033_B_P `1/1 109 0 109 1.00
chr1 204438643 204438643 G T 3548.77 CL0033_B_P `1/1 115 0 115 1.00
chr1 206647742 206647742 A G 3007.77 CL0033_B_P `1/1 90 0 90 1.00
chr1 206647787 206647787 T C 2840.77 CL0033_B_P `1/1 97 0 97 1.00
chr1 206650065 206650065 A G 1266.77 CL0033_B_P `0/1 76 31 45 0.59
chr1 206651107 206651107 G A 312.77 CL0033_B_P `0/1 36 23 13 0.36
chr1 206669465 206669465 C T 1718.77 CL0033_B_P `0/1 132 68 64 0.48
chr1 226019633 226019633 T C 8394.77 CL0033_B_P `0/1 642 324 318 0.50
chr1 226019653 226019653 G A 8498.77 CL0033_B_P `0/1 618 312 306 0.50
chr1 226570840 226570840 T C 3923.77 CL0033_B_P `1/1 119 0 119 1.00
chr1 226573364 226573364 A G 812.77 CL0033_B_P `0/1 58 26 32 0.55
chr1 237044082 237044082 G A 1927.77 CL0033_B_P `0/1 159 85 74 0.47
chr1 237054569 237054569 A G 419.77 CL0033_B_P `0/1 51 31 20 0.39
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chr8 41794934 41794934 C T 3250.77 CL0033_B_P `0/1 238 114 124 0.52
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chr11 47238522 47238522 T C 3282.77 CL0033_B_P `1/1 114 0 114 1.00
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chr11 76257215 76257215 T C 1500.77 CL0033_B_P `0/1 150 83 67 0.45
chr11 95825375 95825383 TGCTGCTGC - 846.73 CL0033_B_P `1/1 28 1 27 0.96
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chr11 128781339 128781339 T C 5262.77 CL0033_B_P `1/1 171 0 171 1.00
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