anticipated-chemistry-of-life
Prep test data for pseudo-absence modeling #13
Replies: 5 comments 16 replies
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Hi @dsilvestro! I will prepare all those tables. Just to start clear from the beginning:
No matter how and where they are generated for now? A simple script spitting out csv's in any folder is fine? Do we want to plan an infrastructure that will be clear for everyone? |
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hey guys I am starting to think about how the model could look like based on made-up data (will add draft code later). I think it would be useful to have a chat in person again sometime to clarify what data we have and how they look like. Maybe later this week? |
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Totally agree. All week fine except Wednesday for the moment on my side! |
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@dsilvestro @Adafede Would tomorrow at 14:00 be OK ? |
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Works for me 👌🏼 |
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works for me too |
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For another project I am working on right now, I am also interested in those "validation species". I could provide good quality LC-ESI-MS (Pos/neg) (C18/HILIC) runs for the following:
Sadly only plants... |
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Great. Let's remove all the GC stuff and have an overlap with PF profiled data. |
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I think we can only "reference in new issue", but not discussion... |
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hey guys I have been thinking about how to model our pseudo-absences. It would be useful to sit down again for a quick chat and to take a look at the actual data together. let me know when that works for you |
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Hi @dsilvestro great that you could have a look ! The planning is dense for me next week. I think that Thursday in the early afternoon should be ok. Would that fit for you ? @Edefossez should be around. Let us know. |
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Works almost any time for me, but I think @oolonek won't be available in the coming days... If I can help alone (or with @Edefossez?) , happy to! |
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this week is a bit complicated for me because my lab is moving to PER17 on Wed/Thu - shall we chat early next week instead? |
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Early next week is not good on my side again. What about Friday 1st april ? (if we need one more round looks like we'll have hit the doodle point) Where is the github doodle option damn ?! |
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You are the busy guys. I'll follow 👍🏼 |
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April 1st works for me (before 4pm) |
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Great. Let's meet at 9:00 am on April 1st. |
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Hi guys! I just pushed what I understood as needed in Happy to discuss it tomorrow! P.S.: For the moment, I only generated 4 combinations to illustrate...there are many others just didn't want to overwhelm the repo with plenty of heavy files |
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Based on our discussion on 23.02.2022 we aim to prepare a table to do some preliminary tests for modeling (pseudo)absences. We'd need:
After this we can start prototyping a model.
as discussed with Daniel, we should also have (at least for some species) the full profile that we can use to validate our predictions.
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