-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html
executable file
·329 lines (308 loc) · 15 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Cytovas FCS Uploader</title>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
<link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/metisMenu/2.7.0/metisMenu.min.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/prism/1.6.0/themes/prism.min.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/animate.css/3.5.2/animate.min.css">
<link href="client/fine-uploader-gallery.css" rel="stylesheet">
<link href="css/mm-horizontal.css" rel="stylesheet" type="text/css">
<link href="css/fu.css" rel="stylesheet" type="text/css">
<link href="css/mm-vertical.css" rel="stylesheet" type="text/css" />
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.1.1/jquery.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js"></script>
<script src="//cdnjs.cloudflare.com/ajax/libs/metisMenu/2.7.0/metisMenu.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/prism/1.6.0/prism.min.js"></script>
<script async="" defer="" src="https://buttons.github.io/buttons.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery-noty/2.4.1/packaged/jquery.noty.packaged.min.js"></script>
<script src="client/s3.jquery.fine-uploader.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/bootbox.js/4.4.0/bootbox.min.js"></script>
<script src="js/fuzzyset.js"></script>
<script src="js/guess.js"></script>
<script src="js/metis.js"></script>
<script src="js/UUID.js"></script>
<script src="js/moment.min.js"></script>
<!-- Fine Uploader Customized Gallery template
====================================================================== -->
<script type="text/template" id="qq-template-s3">
<div class="qq-uploader-selector qq-uploader qq-gallery" qq-drop-area-text="Drop files here">
<div class="choicearea">
<h3>
<div class="label label-success" id="trialchoice"></div>
<div class="label label-success" id="assaychoice"></div>
<div class="label label-success" id="tubetypechoice"></div>
<div class="label label-success" id="specieschoice"></div>
</h3> <button type="button" class="btn btn-primary" id="applychoices">Apply</button>
<div class="qq-upload-button-selector btn btn-primary" id="stagefile">
<div>Stage a file</div>
</div>
</div>
<div class="qq-total-progress-bar-container-selector qq-total-progress-bar-container">
<div role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" class="qq-total-progress-bar-selector qq-progress-bar qq-total-progress-bar"></div>
</div>
<div class="qq-upload-drop-area-selector qq-upload-drop-area" qq-hide-dropzone>
<span class="qq-upload-drop-area-text-selector"></span>
</div>
<span class="qq-drop-processing-selector qq-drop-processing">
<span>Processing dropped files...</span>
<span class="qq-drop-processing-spinner-selector qq-drop-processing-spinner"></span>
</span>
<ul class="qq-upload-list-selector qq-upload-list" role="region" aria-live="polite" aria-relevant="additions removals">
<li>
<span role="status" class="qq-upload-status-text-selector qq-upload-status-text"></span>
<div class="qq-progress-bar-container-selector qq-progress-bar-container">
<div role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" class="qq-progress-bar-selector qq-progress-bar"></div>
</div>
<span class="qq-upload-spinner-selector qq-upload-spinner"></span>
<div class="qq-thumbnail-wrapper">
<a class="preview-link" target="_blank">
<img class="qq-thumbnail-selector" qq-max-size="120" qq-server-scale>
</a>
</div>
<button type="button" class="qq-upload-cancel-selector qq-upload-cancel">X</button>
<button type="button" class="qq-upload-retry-selector qq-upload-retry">
<span class="qq-btn qq-retry-icon" aria-label="Retry"></span>
Retry
</button>
<div class="qq-file-info">
<div class="qq-file-name">
<span class="qq-upload-file-selector qq-upload-file"></span>
<span class="qq-edit-filename-icon-selector qq-edit-filename-icon" aria-label="Edit filename"></span>
<span class="qq-upload-file-selector qq-upload-file qq-editable"><div clas="labchoices"></div></span>
</div>
<div class="checkedtrialchoice"></div>
<div class="checkedassaychoice"></div>
<div class="checkedtubechoice"></div>
<div class="checkedspecieschoice"></div>
<input type="checkbox">
<input class="qq-edit-filename-selector qq-edit-filename" tabindex="0" type="text">
<span class="qq-upload-size-selector qq-upload-size"></span>
<button type="button" class="qq-btn qq-upload-delete-selector qq-upload-delete">
<span class="qq-btn qq-delete-icon" aria-label="Delete"></span>
</button>
<button type="button" class="qq-btn qq-upload-pause-selector qq-upload-pause">
<span class="qq-btn qq-pause-icon" aria-label="Pause"></span>
</button>
<button type="button" class="qq-btn qq-upload-continue-selector qq-upload-continue">
<span class="qq-btn qq-continue-icon" aria-label="Continue"></span>
</button>
</div>
</li>
</ul>
<dialog class="qq-alert-dialog-selector">
<div class="qq-dialog-message-selector"></div>
<div class="qq-dialog-buttons">
<button type="button" class="qq-cancel-button-selector">Close</button>
</div>
</dialog>
<dialog class="qq-confirm-dialog-selector">
<div class="qq-dialog-message-selector"></div>
<div class="qq-dialog-buttons">
<button type="button" class="qq-cancel-button-selector">No</button>
<button type="button" class="qq-ok-button-selector">Yes</button>
</div>
</dialog>
<dialog class="qq-prompt-dialog-selector">
<div class="qq-dialog-message-selector"></div>
<input type="text">
<div class="qq-dialog-buttons">
<button type="button" class="qq-cancel-button-selector">Cancel</button>
<button type="button" class="qq-ok-button-selector">Ok</button>
</div>
</dialog>
</div>
</script>
</head>
<body>
<nav class="navbar navbar-default navbar-static-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#bs-example-navbar-collapse-1">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Cytovas FCS Uploader</a>
</div>
<!-- Collect the nav links, forms, and other content for toggling -->
<div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1">
<ul class="nav navbar-nav navbar-right">
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">
Tools <span class="caret"></span>
</a>
<ul class="dropdown-menu">
<li><a href="browse.html" target="_blank">Browse FCS uploads</a></li>
<li><a href="projects.html" target="_blank">Project Explorer</a></li>
</ul>
</li>
</ul>
</div>
<!-- /.navbar-collapse -->
</div>
<!-- /.container-fluid -->
</nav>
<div class="container">
<div class="row">
<div class="col-md-3">
<nav class="sidebar-nav">
<h3>Select a Trial and Assay</h3>
<ul class="metismenu" id="assay">
<li>
<a class="has-arrow" href="#" aria-expanded="false">Events</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">EV</a></li>
<li><a href="#">Endothelial</a></li>
<li><a href="#">Count</a></li>
<li><a href="#">T-cell</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">LVAD</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">EV</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">Titrations</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Titration</a></li>
</ul>
</li>
</ul>
<h3>Select tube class <small><em>Leave unchecked to activate auto-guesser</em></small></h3>
<ul class="metismenu" id="tubetype">
<li>
<a class="has-arrow" href="#" aria-expanded="false">Type</a>
<ul aria-expanded="false" class="collapse">
<li>
<a class="has-arrow" href="#" aria-expanded="false">Quality controls</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">CST Before</a></li>
<li><a href="#">CST After</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">Calibration controls</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Size beads</a></li>
<li><a href="#">Size SSC</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">Compensation controls</a>
<ul aria-expanded="false" class="collapse">
<li>
<a class="has-arrow noclick" href="#" aria-expanded="false">Blue Stained</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Blue 530/30</a></li>
<li><a href="#">Blue 575/25</a></li>
<li><a href="#">Blue 695/40</a></li>
<li><a href="#">Blue 780/60</a></li>
</ul>
</li>
<li>
<a class="has-arrow noclick" href="#" aria-expanded="false">Red Stained</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Red 670/30</a></li>
<li><a href="#">Red 712/21</a></li>
<li><a href="#">Red 780/60</a></li>
</ul>
</li>
<li>
<a class="has-arrow noclick" href="#" aria-expanded="false">Violet Stained</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Violet 450/50</a></li>
<li><a href="#">Violet 525/50</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">Unstained</a>
</li>
</ul>
</li><!--compensation controls-->
<li>
<a class="has-arrow" href="#" aria-expanded="false">Negative controls</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Triton</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">Samples</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Packet</a></li>
</ul>
</li>
<li>
<a class="has-arrow" href="#" aria-expanded="false">Titrations</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">EV Titration</a></li>
<li><a href="#">Cell Titration</a></li>
</ul>
</li><!--titrations-->
<li>
<a class="has-arrow" href="#" aria-expanded="false">Titration Checks</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">EV Titration Check</a></li>
</ul>
</li><!--titration checks-->
</ul><!--type-->
</li>
</ul><!--tubetype-->
<h3>Select sample metadata</h3>
<ul class="metismenu" id="species">
<li>
<a class="has-arrow" href="#" aria-expanded="false">Species</a>
<ul aria-expanded="false" class="collapse">
<li><a href="#">Homo sapiens</a></li>
<li><a href="#">Mus musculus</a></li>
<li><a href="#">Rattus norvegicus</a></li>
<li><a href="#">Sus scrofa</a></li>
</ul>
</li>
</ul>
</nav>
</div>
<div class="col-md-9">
<!-- Fine Uploader DOM Element-->
<div id="fine-uploader-s3"></div>
<div class="qq-gallery">
</div>
<div id="experiment">
<h4>Experimental metadata</h4>
<div class="container">
<div class="row">
<div class="col-md-3">
Date:
<div class="experiment-date"></div>
</div>
<div class="col-md-3">
Moniker:
<div class="experiment-moniker"></div>
</div>
<div class="col-md-6">
ID:
<div class="experiment-id"></div>
</div>
</div>
</div>
</div>
<form id="qq-form" action="cytovas-instrument-files.s3.amazonaws.com"><input type="hidden" name="expdate" id="expdate"><input type="hidden" name="timestamp" id="timestamp"><input type="hidden" id="expmoniker" name="expmoniker"><input type="hidden" id="expuuid" name="expuuid"></form>
<p>
<br>
<div id="addSubmit" class="btn btn-primary btn-lg">Upload</div>
<div id="button-reset" class="btn btn-warning btn-lg">Reset</div>
</p>
<!-- Your code to create an instance of Fine Uploader and bind to the DOM/template-->
<script src="js/uploader.js"></script>
</div>
</div>
</div>
</body>
</html>