From 9e20658e7b527c0d56a5eb1a36e5f02406c188d9 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sat, 1 Mar 2025 09:43:03 +0000
Subject: [PATCH] Bump pdb-handler from 0.1.2 to 0.2.0

Bumps [pdb-handler](/~https://github.com/rvhonorato/pdb-handler) from 0.1.2 to 0.2.0.
- [Commits](/~https://github.com/rvhonorato/pdb-handler/commits)

---
updated-dependencies:
- dependency-name: pdb-handler
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Cargo.lock | 122 +++++------------------------------------------------
 1 file changed, 10 insertions(+), 112 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 0ff7950..86b08ce 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -75,15 +75,6 @@ dependencies = [
  "num-traits",
 ]
 
-[[package]]
-name = "atomic-polyfill"
-version = "1.0.3"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "8cf2bce30dfe09ef0bfaef228b9d414faaf7e563035494d7fe092dba54b300f4"
-dependencies = [
- "critical-section",
-]
-
 [[package]]
 name = "autocfg"
 version = "1.4.0"
@@ -169,12 +160,6 @@ dependencies = [
  "cfg-if",
 ]
 
-[[package]]
-name = "critical-section"
-version = "1.2.0"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "790eea4361631c5e7d22598ecd5723ff611904e3344ce8720784c93e3d83d40b"
-
 [[package]]
 name = "crossbeam-deque"
 version = "0.8.6"
@@ -273,14 +258,14 @@ dependencies = [
 
 [[package]]
 name = "haddock-restraints"
-version = "0.8.0"
+version = "0.8.1"
 dependencies = [
  "clap",
  "itertools",
  "kd-tree",
  "nalgebra",
  "pdb-handler",
- "pdbtbx 0.12.0",
+ "pdbtbx",
  "rand",
  "rust-sasa",
  "serde",
@@ -288,15 +273,6 @@ dependencies = [
  "tempfile",
 ]
 
-[[package]]
-name = "hash32"
-version = "0.2.1"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "b0c35f58762feb77d74ebe43bdbc3210f09be9fe6742234d573bacc26ed92b67"
-dependencies = [
- "byteorder",
-]
-
 [[package]]
 name = "hash32"
 version = "0.3.1"
@@ -312,26 +288,13 @@ version = "0.15.2"
 source = "registry+/~https://github.com/rust-lang/crates.io-index"
 checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289"
 
-[[package]]
-name = "heapless"
-version = "0.7.17"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "cdc6457c0eb62c71aac4bc17216026d8410337c4126773b9c5daba343f17964f"
-dependencies = [
- "atomic-polyfill",
- "hash32 0.2.1",
- "rustc_version",
- "spin",
- "stable_deref_trait",
-]
-
 [[package]]
 name = "heapless"
 version = "0.8.0"
 source = "registry+/~https://github.com/rust-lang/crates.io-index"
 checksum = "0bfb9eb618601c89945a70e254898da93b13be0388091d42117462b265bb3fad"
 dependencies = [
- "hash32 0.3.1",
+ "hash32",
  "stable_deref_trait",
 ]
 
@@ -408,16 +371,6 @@ version = "0.4.14"
 source = "registry+/~https://github.com/rust-lang/crates.io-index"
 checksum = "78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89"
 
-[[package]]
-name = "lock_api"
-version = "0.4.12"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17"
-dependencies = [
- "autocfg",
- "scopeguard",
-]
-
 [[package]]
 name = "matrixmultiply"
 version = "0.3.9"
@@ -542,29 +495,15 @@ checksum = "57c0d7b74b563b49d38dae00a0c37d4d6de9b432382b2892f0574ddcae73fd0a"
 
 [[package]]
 name = "pdb-handler"
-version = "0.1.2"
+version = "0.2.0"
 source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "95ec009e78d186ba6209232b7b34b2ae24db0454346b94e743e1aaede1c340bf"
+checksum = "b3ec1fcc64ac3eac5f5cf32e80429589b419258929e7bfb89d55ea4d114ecb8f"
 dependencies = [
- "pdbtbx 0.11.0",
+ "pdbtbx",
  "regex",
  "serde",
 ]
 
-[[package]]
-name = "pdbtbx"
-version = "0.11.0"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "d8aeda12d25a2e102a6e3f1efd8fe2afd054cbafa7d54414d5015e8e0f4beb4b"
-dependencies = [
- "doc-cfg",
- "flate2",
- "indexmap",
- "rayon",
- "rstar 0.11.0",
- "serde",
-]
-
 [[package]]
 name = "pdbtbx"
 version = "0.12.0"
@@ -575,7 +514,7 @@ dependencies = [
  "flate2",
  "indexmap",
  "rayon",
- "rstar 0.12.2",
+ "rstar",
  "serde",
 ]
 
@@ -709,24 +648,13 @@ version = "0.8.5"
 source = "registry+/~https://github.com/rust-lang/crates.io-index"
 checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c"
 
-[[package]]
-name = "rstar"
-version = "0.11.0"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "73111312eb7a2287d229f06c00ff35b51ddee180f017ab6dec1f69d62ac098d6"
-dependencies = [
- "heapless 0.7.17",
- "num-traits",
- "smallvec",
-]
-
 [[package]]
 name = "rstar"
 version = "0.12.2"
 source = "registry+/~https://github.com/rust-lang/crates.io-index"
 checksum = "421400d13ccfd26dfa5858199c30a5d76f9c54e0dba7575273025b43c5175dbb"
 dependencies = [
- "heapless 0.8.0",
+ "heapless",
  "num-traits",
  "smallvec",
 ]
@@ -739,21 +667,12 @@ checksum = "5f2d2375f51fdebd91c5f057f03536bb748a7597cb3d388a634de147dec1da79"
 dependencies = [
  "lazy_static",
  "nalgebra",
- "pdbtbx 0.12.0",
+ "pdbtbx",
  "rayon",
- "rstar 0.12.2",
+ "rstar",
  "snafu",
 ]
 
-[[package]]
-name = "rustc_version"
-version = "0.4.1"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "cfcb3a22ef46e85b45de6ee7e79d063319ebb6594faafcf1c225ea92ab6e9b92"
-dependencies = [
- "semver",
-]
-
 [[package]]
 name = "rustix"
 version = "0.38.42"
@@ -782,18 +701,6 @@ dependencies = [
  "bytemuck",
 ]
 
-[[package]]
-name = "scopeguard"
-version = "1.2.0"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49"
-
-[[package]]
-name = "semver"
-version = "1.0.24"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "3cb6eb87a131f756572d7fb904f6e7b68633f09cca868c5df1c4b8d1a694bbba"
-
 [[package]]
 name = "serde"
 version = "1.0.217"
@@ -866,15 +773,6 @@ dependencies = [
  "syn",
 ]
 
-[[package]]
-name = "spin"
-version = "0.9.8"
-source = "registry+/~https://github.com/rust-lang/crates.io-index"
-checksum = "6980e8d7511241f8acf4aebddbb1ff938df5eebe98691418c4468d0b72a96a67"
-dependencies = [
- "lock_api",
-]
-
 [[package]]
 name = "stable_deref_trait"
 version = "1.2.0"