From d21bb954bb6acf33523689d0666569c83409e7c5 Mon Sep 17 00:00:00 2001 From: Susanna Kiwala Date: Fri, 28 Jun 2024 08:13:31 -0500 Subject: [PATCH] Add language reflecting that all prediction algorithms come pre-installed in our Docker container --- docs/install.rst | 3 ++- docs/pvacseq/getting_started.rst | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/docs/install.rst b/docs/install.rst index f4c8e5ea..dc77d196 100644 --- a/docs/install.rst +++ b/docs/install.rst @@ -266,7 +266,8 @@ Docker and CWL Versioned Docker containers for pVACtools are available on DockerHub using the `griffithlab/pvactools `_ repo. The Docker container contains pVACtools as well as installations of the -standalone IEDB MHC Class I and Class II software. These are installed at +standalone IEDB MHC Class I and Class II software and all other supported prediction +algorithms (MHCflurry, MHCnuggets, BigMHC, and DeepImmuno). Standalone IEDB is installed at ``/opt/iedb`` (``--iedb-install-directory /opt/iedb``). An example on how to run pVACseq using Docker can be found on the :ref:`Getting Started ` page. diff --git a/docs/pvacseq/getting_started.rst b/docs/pvacseq/getting_started.rst index b11a23d8..2a658a14 100644 --- a/docs/pvacseq/getting_started.rst +++ b/docs/pvacseq/getting_started.rst @@ -31,7 +31,8 @@ ____________________________ Versioned Docker containers for pVACtools are available on DockerHub using the `griffithlab/pvactools `_ repo. The Docker container contains pVACtools as well as installations of the -standalone IEDB MHC Class I and Class II software. These are installed at +standalone IEDB MHC Class I and Class II software and all other supported prediction +algorithms (MHCflurry, MHCnuggets, BigMHC, and DeepImmuno). Standalone IEDB is installed at ``/opt/iedb`` (``--iedb-install-directory /opt/iedb``). After `installing Docker `_