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Welcome to the genVisR_workshop wiki!

Currently this is just a list of potential topics to cover:

Table of Contents

1. Module 1. Introduction to R

• Installation
• CRAN and Bioconductor
• Data types
• Reading and writing Data
• Data Frames, slicing, and manipulation
• Basic control structures
• apply family of functions
• Additional resources

1. Module 2. Introduction to ggplot2

• wide vs long format
• geom and aes
• axis scaling and manipulation
• faceting
• themes and colours
• Additional resources

1. Module 3. Introduction to GenVisR

• Waterfall plots
• TvTi plots
• cnSpec plots
• cnView plots
• lohSpec plots
• genCov plots

1. Module 4. Genome Browsers

• IGV
• UCSC
• Ensembl

1. Module 5. Transcript Visualization

• ProteinPaint
• CBioportal
• GenVisR::lolliplot

1. Module 7. Pathway Visualization

• KEGG
• CytoScape

1. Module 8. Circos plots

2. Module 9. CIViC