| title | feature_text | feature_image | excerpt | layout |
|---|---|---|---|---|
Schedule |
## Genomic Data Visualization and Interpretation
Tutorial series for visualizing and interpreting omic data
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assets/genvis-dna-bg_optimized_v1a.png |
home |
Physalia-courses, Freie Universität Berlin, Germany, 8-12 Apr 2019 (course page)
| Day | Time | Duration | Module | Topic |
|---|---|---|---|---|
| 1 | 09:30-10:30 | 1:00 | 1 | Lecture: Introduction to Genomic Data Visualization and Interpretation |
| 10:30-11:00 | 0:30 | Review of Central Concepts and Resources | ||
| 11:00-12:00 | 1:00 | Genome Browsing with IGV, UCSC and Ensembl - part 1 | ||
| 12:00-13:00 | 1:00 | Lunch | ||
| 13:00-15:00 | 2:00 | Genome Browsing with IGV, UCSC and Ensembl - part 2 | ||
| 15:00-17:30 | 2:30 | Web Resources for Genomic Data Visualization and Interpretation | ||
| 2 | 09:30-10:30 | 1:00 | 2 | Lecture: Using R for Genomic Data Visualization and Interpretation |
| 10:30-12:00 | 1:30 | Introduction to R | ||
| 12:00-13:00 | 1:00 | Lunch | ||
| 13:00-15:30 | 2:30 | Introduction to ggplot2 - part 1 | ||
| 3 | 09:30-11:00 | 1:30 | Introduction to ggplot2 - part 2 | |
| 11:00-12:00 | 1:00 | 3 | Introduction to GenVisR - part 1 | |
| 12:00-13:00 | 1:00 | Lunch | ||
| 13:00-17:30 | 4:30 | Introduction to GenVisR - part 2 | ||
| 4 | 09:30-10:30 | 1:00 | 4 | Lecture: Expression Profiling, Visualization, and Interpretation |
| 10:30-11:30 | 1:00 | Differential Expression with DEseq2 | ||
| 11:30-12:30 | 1:00 | Pathway Analysis | ||
| 12:30-13:30 | 1:00 | Lunch | ||
| 13:30-14:00 | 0:30 | Pathway Visualization | ||
| 14:00-14:30 | 0:30 | 5 | Lecture: Variant Annotation and Interpretation | |
| 14:30-15:30 | 1:00 | Variant Annotation with VEP | ||
| 15:30-17:30 | 2:00 | Web resources for Variant Interpretation | ||
| 5 | 09:30-11:00 | 1:30 | 6 | Review |
| 11:00-12:00 | 1:00 | Open Forum for Questions | ||
| 12:00-13:00 | 1:00 | Lunch | ||
| 13:00-17:30 | 4:30 | Work on your own data or additional exercises |