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KeyError: 'X' for NLF encoder #10

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berkedilekoglu opened this issue Sep 24, 2022 · 1 comment
Open

KeyError: 'X' for NLF encoder #10

berkedilekoglu opened this issue Sep 24, 2022 · 1 comment

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@berkedilekoglu
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I'm using Blosum62 and NLF encoders. However for an amino acid sequence 'GILKDYPHSAFTLEKKVIKTEPEDSRXXXXX' NLF encoder gives a key error.

KeyError: 'X'

I know the meaning of the error: the letter 'X' is not encoded in NLF matrix.

I wonder that should I use only Blosum62 ? Or should I use another letter instead of 'X' ? Or there might be any update for CSV file?
@dmnfarrell
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Sorry for delay in reply. You could try using N.

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@dmnfarrell @berkedilekoglu