From 7e47b375582e82d61e9a5e9e126f7c50797250b9 Mon Sep 17 00:00:00 2001
From: joshuailevy <joshua.levy16@gmail.com>
Date: Mon, 10 Feb 2025 14:31:38 -0800
Subject: [PATCH] ensure secondary solve follows user selection

---
 freyja/sample_deconv.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/freyja/sample_deconv.py b/freyja/sample_deconv.py
index 28756c6..1164766 100644
--- a/freyja/sample_deconv.py
+++ b/freyja/sample_deconv.py
@@ -212,7 +212,7 @@ def solve_demixing_problem(df_barcodes, mix, depths, eps, adapt,
         constraints = [sum(x) == 1, x >= 0]
         prob = cp.Problem(cp.Minimize(cost), constraints)
         try:
-            prob.solve(verbose=False, solver=cp.ECOS)
+            prob.solve(verbose=False, solver=solver_)
         except cp.error.SolverError:
             raise ValueError('Solver error encountered, most'
                              'likely due to insufficient sequencing depth.'