cnvpytor/imgs/CNVpytor_v1.1.svg

<?xml version="1.0" encoding="UTF-8"?>
<!-- Do not edit this file with editors other than diagrams.net -->
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<svg xmlns="http://www.w3.org/2000/svg" style="background-color: rgb(255, 255, 255);" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="1163px" height="1005px" viewBox="-0.5 -0.5 1163 1005" content="&lt;mxfile host=&quot;app.diagrams.net&quot; modified=&quot;2021-09-21T16:48:19.149Z&quot; agent=&quot;5.0 (Macintosh)&quot; etag=&quot;xfbl8cLdFHOdr_KgKhRF&quot; version=&quot;15.2.9&quot; type=&quot;google&quot;&gt;&lt;diagram id=&quot;G_Nj_3IjYpHKtQFoBHQ-&quot; name=&quot;Page-1&quot;&gt;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&lt;/diagram&gt;&lt;/mxfile&gt;"><defs><linearGradient x1="0%" y1="100%" x2="0%" y2="0%" id="mx-gradient-1f8de0-1-b1ddf0-1-s-0"><stop offset="0%" style="stop-color: rgb(177, 221, 240); stop-opacity: 1;"/><stop offset="100%" style="stop-color: rgb(31, 141, 224); stop-opacity: 1;"/></linearGradient><linearGradient x1="0%" y1="0%" x2="0%" y2="100%" id="mx-gradient-ffcc99-1-99ccff-1-s-0"><stop offset="0%" style="stop-color: rgb(255, 204, 153); stop-opacity: 1;"/><stop offset="100%" style="stop-color: rgb(153, 204, 255); stop-opacity: 1;"/></linearGradient><linearGradient x1="0%" y1="0%" x2="0%" y2="100%" id="mx-gradient-ffb366-1-99ccff-1-s-0"><stop offset="0%" style="stop-color: rgb(255, 179, 102); stop-opacity: 1;"/><stop offset="100%" style="stop-color: rgb(153, 204, 255); stop-opacity: 1;"/></linearGradient></defs><g><rect x="391" y="21" width="400" height="250" fill="#ccffcc" stroke="none" pointer-events="all"/><path d="M 361 208.5 L 371 208.5 L 371 311 L 491 311 L 491 410.9" fill="none" stroke="#3333ff" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 491 417.65 L 486.5 408.65 L 491 410.9 L 495.5 408.65 Z" fill="#3333ff" stroke="#3333ff" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="1" y="21" width="360" height="250" fill="#d4e1f5" stroke="none" pointer-events="all"/><path d="M 211 889 L 231 649 L 951 649 L 971 889 Z" fill="url(#mx-gradient-1f8de0-1-b1ddf0-1-s-0)" stroke="#10739e" stroke-miterlimit="10" transform="rotate(180,591,769)" pointer-events="all"/><rect x="691" y="751" width="200" height="50" fill="#e3c800" stroke="#b09500" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 198px; height: 1px; padding-top: 776px; margin-left: 692px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b><font style="font-size: 18px">DATA PROCESING</font></b></div></div></div></foreignObject><text x="791" y="780" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">DATA PROCESING</text></switch></g><rect x="327.25" y="744" width="127.5" height="50" fill="#e3c800" stroke="#b09500" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 126px; height: 1px; padding-top: 769px; margin-left: 328px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b><font style="font-size: 18px">PLOTTING</font></b></div></div></div></foreignObject><text x="391" y="773" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">PLOTTING</text></switch></g><path d="M 781 889 L 777 889 L 777 911.63" fill="none" stroke="#000000" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 777 916.88 L 773.5 909.88 L 777 911.63 L 780.5 909.88 Z" fill="#000000" stroke="#000000" stroke-miterlimit="10" pointer-events="all"/><path d="M 401 889 L 401 914.63" fill="none" stroke="#000000" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 401 919.88 L 397.5 912.88 L 401 914.63 L 404.5 912.88 Z" fill="#000000" stroke="#000000" stroke-miterlimit="10" pointer-events="all"/><path d="M 181 131 L 183.5 131 L 183.5 150.9" fill="none" stroke="#006eaf" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 183.5 157.65 L 179 148.65 L 183.5 150.9 L 188 148.65 Z" fill="#006eaf" stroke="#006eaf" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><path d="M 11 31 L 351 31 L 351 93.5 L 181 131 L 11 93.5 Z" fill="#bd7000" stroke="none" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe flex-start; justify-content: unsafe center; width: 338px; height: 1px; padding-top: 38px; margin-left: 12px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><div><b><font style="font-size: 18px">GET READ-DEPTH DATA</font></b></div><div><font size="3"><br /></font></div><div><font size="3"># cnvpytor -root file.pytor -rd file.bam</font></div></div></div></div></foreignObject><text x="181" y="50" fill="#FFFFFF" font-family="Helvetica" font-size="12px" text-anchor="middle">GET READ-DEPTH DATA...</text></switch></g><path d="M 996 131 L 996 150.9" fill="none" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 996 157.65 L 991.5 148.65 L 996 150.9 L 1000.5 148.65 Z" fill="#b20000" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><path d="M 831 31 L 1161 31 L 1161 93.5 L 996 131 L 831 93.5 Z" fill="#bd7000" stroke="none" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe flex-start; justify-content: unsafe center; width: 328px; height: 1px; padding-top: 38px; margin-left: 832px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><div><b><font style="font-size: 18px">GET VARIANT DATA</font></b></div><div><b><font size="3"><br /></font></b></div><div><font size="3"># cnvpytor -root file.pytor -snp file.vcf.gz</font></div></div></div></div></foreignObject><text x="996" y="50" fill="#FFFFFF" font-family="Helvetica" font-size="12px" text-anchor="middle">GET VARIANT DATA...</text></switch></g><rect x="411" y="781" width="105" height="60" rx="9" ry="9" fill="#000000" stroke="#000000" pointer-events="all" transform="translate(2,3)" opacity="0.25"/><rect x="411" y="781" width="105" height="60" rx="9" ry="9" fill="#bac8d3" stroke="#23445d" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 103px; height: 1px; padding-top: 811px; margin-left: 412px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>MANHATTAN<br />STYLE PLOTS<br /></b></div></div></div></foreignObject><text x="464" y="815" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">MANHATTAN...</text></switch></g><ellipse cx="321" cy="811" rx="40" ry="40" fill="#000000" stroke="#000000" pointer-events="all" transform="translate(2,3)" opacity="0.25"/><ellipse cx="321" cy="811" rx="40" ry="40" fill="#bac8d3" stroke="#23445d" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 78px; height: 1px; padding-top: 811px; margin-left: 282px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>CIRCULAR<br />PLOTS<br /></b></div></div></div></foreignObject><text x="321" y="815" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">CIRCULAR...</text></switch></g><path d="M 286 701 C 258 701 251 721 273.4 725 C 251 733.8 276.2 753 294.4 745 C 307 761 349 761 363 745 C 391 745 391 729 373.5 721 C 391 705 363 689 338.5 697 C 321 685 293 685 286 701 Z" fill="#000000" stroke="#000000" stroke-miterlimit="10" pointer-events="all" transform="translate(2,3)" opacity="0.25"/><path d="M 286 701 C 258 701 251 721 273.4 725 C 251 733.8 276.2 753 294.4 745 C 307 761 349 761 363 745 C 391 745 391 729 373.5 721 C 391 705 363 689 338.5 697 C 321 685 293 685 286 701 Z" fill="#bac8d3" stroke="#23445d" stroke-miterlimit="10" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 138px; height: 1px; padding-top: 721px; margin-left: 252px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>GENOME-WIDE<br />PLOTS<br /></b></div></div></div></foreignObject><text x="321" y="725" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">GENOME-WIDE...</text></switch></g><rect x="403.5" y="691" width="120" height="60" fill="#000000" stroke="#000000" pointer-events="all" transform="translate(2,3)" opacity="0.25"/><rect x="403.5" y="691" width="120" height="60" fill="#bac8d3" stroke="#23445d" pointer-events="all"/><path d="M 415.5 691 L 415.5 751 M 511.5 691 L 511.5 751" fill="none" stroke="#23445d" stroke-miterlimit="10" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 94px; height: 1px; padding-top: 721px; margin-left: 417px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>REGIONS<br /></b></div></div></div></foreignObject><text x="464" y="725" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">REGIONS&#xa;</text></switch></g><rect x="211" y="579" width="370" height="70" fill="#000000" stroke="#000000" pointer-events="all" transform="translate(2,3)" opacity="0.25"/><rect x="211" y="579" width="370" height="70" fill="#b1ddf0" stroke="#10739e" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe flex-start; justify-content: unsafe flex-start; width: 368px; height: 1px; padding-top: 586px; margin-left: 213px;"><div style="box-sizing: border-box; font-size: 0px; text-align: left;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 15px"><b><span> </span><font style="font-size: 18px">INTERACTIVE MODE</font><br /></b><span> </span><span># cnvpytor -root file.pytor -view 10000</span><br /><span> cnvpytor shell&gt; ...</span></font></div></div></div></foreignObject><text x="213" y="598" fill="#000000" font-family="Helvetica" font-size="12px">INTERACTIVE MODE...</text></switch></g><path d="M 183.5 261 L 183.5 280.9" fill="none" stroke="#006eaf" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 183.5 287.65 L 179 278.65 L 183.5 280.9 L 188 278.65 Z" fill="#006eaf" stroke="#006eaf" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="13.5" y="161" width="340" height="100" rx="7" ry="7" fill="#f0a30a" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 338px; height: 1px; padding-top: 211px; margin-left: 15px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 18px"><b style="text-align: left">CALCULATE RD HISTOGRAMS</b><br style="text-align: left" /><br style="text-align: left" /><span style="text-align: left"># cnvpytor -root file.pytor -his 10000 </span></font></div></div></div></foreignObject><text x="184" y="215" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">CALCULATE RD HISTOGRAMS...</text></switch></g><path d="M 183.5 391 L 183.5 410.9" fill="none" stroke="#006eaf" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 183.5 417.65 L 179 408.65 L 183.5 410.9 L 188 408.65 Z" fill="#006eaf" stroke="#006eaf" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><path d="M 183.5 391 L 183.5 411 L 183.5 401 L 183.5 410.9" fill="none" stroke="#000000" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 183.5 417.65 L 179 408.65 L 183.5 410.9 L 188 408.65 Z" fill="#000000" stroke="#000000" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="13.5" y="291" width="340" height="100" rx="7" ry="7" fill="#f0a30a" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 338px; height: 1px; padding-top: 341px; margin-left: 15px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b style="font-size: 18px ; text-align: left">PARTITION RD HISTOGRAMS<br /></b><br style="font-size: 18px ; text-align: left" /><span style="font-size: 18px ; text-align: left"># </span><span style="font-size: 18px ; text-align: left">cnvpytor</span><span style="font-size: 18px ; text-align: left"> -root file.pytor -partition 10000 </span></div></div></div></foreignObject><text x="184" y="345" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">PARTITION RD HISTOGRAMS...</text></switch></g><path d="M 183.5 521 L 183.5 551 L 591.5 551 L 591.5 570.9" fill="none" stroke="#000000" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 591.5 577.65 L 587 568.65 L 591.5 570.9 L 596 568.65 Z" fill="#000000" stroke="#000000" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="13.5" y="421" width="340" height="100" rx="7" ry="7" fill="url(#mx-gradient-ffcc99-1-99ccff-1-s-0)" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 338px; height: 1px; padding-top: 471px; margin-left: 15px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font><font style="font-size: 18px" color="#ffffff"><b style="text-align: left">CALL CNV</b><br style="text-align: left" /><br style="text-align: left" /><span style="text-align: left"># </span><span style="text-align: left">cnvpytor</span><span style="text-align: left"> -root file.pytor -call 10000 </span></font><br /></font></div></div></div></foreignObject><text x="184" y="475" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">CALL CNV...</text></switch></g><path d="M 996 261 L 996 280.9" fill="none" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 996 287.65 L 991.5 278.65 L 996 280.9 L 1000.5 278.65 Z" fill="#b20000" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><path d="M 831 211 L 801 211 L 801 81 L 781.1 81" fill="none" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" stroke-dasharray="9 9" pointer-events="stroke"/><path d="M 774.35 81 L 783.35 76.5 L 781.1 81 L 783.35 85.5 Z" fill="#2d7600" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="831" y="161" width="330" height="100" rx="7" ry="7" fill="#f0a30a" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 328px; height: 1px; padding-top: 211px; margin-left: 832px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 18px"><b style="text-align: left">MASK VARIANTRS<br /></b><br style="text-align: left" /><span style="text-align: left"># cnvpytor -root file.pytor -mask_snps</span></font></div></div></div></foreignObject><text x="996" y="215" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">MASK VARIANTRS...</text></switch></g><path d="M 996 391 L 996 551 L 591.5 551 L 591.5 570.9" fill="none" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 591.5 577.65 L 587 568.65 L 591.5 570.9 L 596 568.65 Z" fill="#b20000" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><path d="M 831 341 L 691 341 L 691 410.9" fill="none" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 691 417.65 L 686.5 408.65 L 691 410.9 L 695.5 408.65 Z" fill="#b20000" stroke="#b20000" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="831" y="291" width="330" height="100" rx="7" ry="7" fill="url(#mx-gradient-ffb366-1-99ccff-1-s-0)" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 328px; height: 1px; padding-top: 341px; margin-left: 832px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 18px"><span style="font-weight: bold ; text-align: left">CREATE BAF HISTOGRAMS</span><br style="text-align: left" /><br style="text-align: left" /><span style="text-align: left"># cnvpytor -root file.pytor -baf 10000</span></font></div></div></div></foreignObject><text x="996" y="345" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">CREATE BAF HISTOGRAMS...</text></switch></g><rect x="601" y="579" width="370" height="70" fill="#000000" stroke="#000000" pointer-events="all" transform="translate(2,3)" opacity="0.25"/><rect x="601" y="579" width="370" height="70" fill="#b1ddf0" stroke="#10739e" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe flex-start; justify-content: unsafe flex-start; width: 338px; height: 1px; padding-top: 586px; margin-left: 633px;"><div style="box-sizing: border-box; font-size: 0px; text-align: left;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font><b style="font-size: 18px">EXECUTING SCRIPT</b> <br /><font style="font-size: 15px"># cnvpytor -root file.pytor -view 10000 &lt; file.spytor</font><br /></font></div></div></div></foreignObject><text x="633" y="598" fill="#000000" font-family="Helvetica" font-size="12px">EXECUTING SCRIPT...</text></switch></g><path d="M 641 756 L 661 706 L 761 706 L 781 756 Z" fill="#bac8d3" stroke="#23445d" stroke-miterlimit="10" transform="rotate(180,711,731)" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 138px; height: 1px; padding-top: 731px; margin-left: 642px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>FILTERING<br />CNV CALLS</b></div></div></div></foreignObject><text x="711" y="735" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">FILTERING...</text></switch></g><path d="M 801 756 L 821 706 L 921 706 L 941 756 Z" fill="#bac8d3" stroke="#23445d" stroke-miterlimit="10" transform="rotate(180,871,731)" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 138px; height: 1px; padding-top: 731px; margin-left: 802px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>GENOTYPING</b></div></div></div></foreignObject><text x="871" y="735" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">GENOTYPING</text></switch></g><path d="M 641 841 L 661 791 L 761 791 L 781 841 Z" fill="#bac8d3" stroke="#23445d" stroke-miterlimit="10" transform="rotate(180,711,816)" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 138px; height: 1px; padding-top: 816px; margin-left: 642px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>ANNOTATION</b></div></div></div></foreignObject><text x="711" y="820" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">ANNOTATION</text></switch></g><path d="M 801 841 L 821 791 L 921 791 L 941 841 Z" fill="#bac8d3" stroke="#23445d" stroke-miterlimit="10" transform="rotate(180,871,816)" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 138px; height: 1px; padding-top: 816px; margin-left: 802px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>MULTIPLE SAMPLE JOINT CALLS<br /></b></div></div></div></foreignObject><text x="871" y="820" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">MULTIPLE SAMPLE JOINT C...</text></switch></g><ellipse cx="591.5" cy="615" rx="34" ry="34" fill="#ffffff" stroke="#000000" pointer-events="all"/><path d="M 231 921 L 571 921 L 571 971 L 401 1001 L 231 971 Z" fill="#000000" stroke="#000000" stroke-miterlimit="10" transform="translate(2,3)rotate(180,401,961)" pointer-events="all" opacity="0.25"/><path d="M 231 921 L 571 921 L 571 971 L 401 1001 L 231 971 Z" fill="#1ba1e2" stroke="#006eaf" stroke-miterlimit="10" transform="rotate(180,401,961)" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe flex-start; justify-content: unsafe center; width: 338px; height: 1px; padding-top: 928px; margin-left: 232px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><div><span style="font-size: 18px"><b><br /></b></span></div><div><span style="font-size: 18px"><b>PLOT FILES</b></span></div><div><font size="3">png, jpg, gif, ps, pdf, eps</font></div></div></div></div></foreignObject><text x="401" y="940" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">PLOT FILES...</text></switch></g><path d="M 607 918 L 947 918 L 947 969.88 L 777 1001 L 607 969.88 Z" fill="#000000" stroke="#000000" stroke-miterlimit="10" transform="translate(2,3)rotate(180,777,959.5)" pointer-events="all" opacity="0.25"/><path d="M 607 918 L 947 918 L 947 969.88 L 777 1001 L 607 969.88 Z" fill="#1ba1e2" stroke="#006eaf" stroke-miterlimit="10" transform="rotate(180,777,959.5)" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe flex-start; justify-content: unsafe center; width: 338px; height: 1px; padding-top: 925px; margin-left: 608px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><div><b><font style="font-size: 18px"><br /></font></b></div><div><span style="font-size: 18px"><b>CNV CALL FILES</b></span></div><div><span style="font-size: 18px">tsv, vcf, xls</span></div></div></div></div></foreignObject><text x="777" y="937" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">CNV CALL FILES...</text></switch></g><rect x="498.25" y="661" width="185.5" height="20" fill="none" stroke="none" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 184px; height: 1px; padding-top: 671px; margin-left: 499px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b><font style="font-size: 18px">VIEWER</font></b></div></div></div></foreignObject><text x="591" y="675" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">VIEWER</text></switch></g><path d="M 591 131 L 591 150.9" fill="none" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 591 157.65 L 586.5 148.65 L 591 150.9 L 595.5 148.65 Z" fill="#2d7600" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="411" y="31" width="360" height="100" rx="7" ry="7" fill="#f0a30a" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 358px; height: 1px; padding-top: 81px; margin-left: 412px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 18px"><b style="text-align: left">RD FROM VARIANT DATA<br /></b><br style="text-align: left" /></font><div><font style="font-size: 18px"><span style="text-align: left"># cnvpytor -root file.pytor -snp2rd   <br /></span></font></div><div><font style="font-size: 18px"><span style="text-align: left"># cnvpytor  </span></font><font style="font-size: 18px"><span style="text-align: left"><font style="font-size: 18px"><span style="text-align: left">-root file.pytor -rg hg38<br /></span></font></span></font></div></div></div></div></foreignObject><text x="591" y="85" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">RD FROM VARIANT DATA...</text></switch></g><path d="M 450.96 261 L 451 341 L 363.6 341" fill="none" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" stroke-dasharray="9 9" pointer-events="stroke"/><path d="M 356.85 341 L 365.85 336.5 L 363.6 341 L 365.85 345.5 Z" fill="#2d7600" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><path d="M 591 261 L 591 410.9" fill="none" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" stroke-dasharray="9 9" pointer-events="stroke"/><path d="M 591 417.65 L 586.5 408.65 L 591 410.9 L 595.5 408.65 Z" fill="#2d7600" stroke="#2d7600" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="411" y="161" width="360" height="100" rx="7" ry="7" fill="#f0a30a" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 358px; height: 1px; padding-top: 211px; margin-left: 412px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(255, 255, 255); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 18px"><b style="text-align: left"> CALCULATE HISTOGRAMS <br /></b><br style="text-align: left" /><span style="text-align: left"># cnvpytor -root file.pytor -snp2his 10000<br /></span></font></div></div></div></foreignObject><text x="591" y="215" fill="#ffffff" font-family="Helvetica" font-size="12px" text-anchor="middle">CALCULATE HISTOGRAMS...</text></switch></g><rect x="421" y="1" width="130" height="20" fill="#ccffcc" stroke="none" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 128px; height: 1px; padding-top: 11px; margin-left: 422px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><div align="center"><b>Alternative</b></div></div></div></div></foreignObject><text x="486" y="15" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">Alternative</text></switch></g><rect x="1" y="1" width="137.5" height="20" fill="#d4e1f5" stroke="none" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 136px; height: 1px; padding-top: 11px; margin-left: 2px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><b>Recommended</b></div></div></div></foreignObject><text x="70" y="15" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">Recommended</text></switch></g><path d="M 591 521 L 591 540.9" fill="none" stroke="#660066" stroke-width="3" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 591 547.65 L 586.5 538.65 L 591 540.9 L 595.5 538.65 Z" fill="#660066" stroke="#660066" stroke-width="3" stroke-miterlimit="10" pointer-events="all"/><rect x="391" y="421" width="400" height="100" rx="7" ry="7" fill="url(#mx-gradient-ffcc99-1-99ccff-1-s-0)" stroke="#bd7000" stroke-width="2" pointer-events="all"/><g transform="translate(-0.5 -0.5)"><switch><foreignObject style="overflow: visible; text-align: left;" pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 398px; height: 1px; padding-top: 471px; margin-left: 392px;"><div style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><div><font><font style="font-size: 18px" color="#ffffff"><b style="text-align: left">JOINT SEGMENTATION &amp; CALLER<br />(prototype)<br /></b></font></font></div><font><font style="font-size: 18px" color="#ffffff"><span style="text-align: left"># </span><span style="text-align: left">cnvpytor</span><span style="text-align: left"> -root file.pytor -call combined 10000 </span></font><br /></font></div></div></div></foreignObject><text x="591" y="475" fill="#000000" font-family="Helvetica" font-size="12px" text-anchor="middle">JOINT SEGMENTATION &amp; CALLER...</text></switch></g></g><switch><g requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility"/><a transform="translate(0,-5)" xlink:href="https://www.diagrams.net/doc/faq/svg-export-text-problems" target="_blank"><text text-anchor="middle" font-size="10px" x="50%" y="100%">Viewer does not support full SVG 1.1</text></a></switch></svg>