The goal of DataTidyGelaDURT is to provide easy, documented access to
the datasets analysed in Effects of BCG vaccination on donor
unrestricted T cells in two prospective cohort studies (Gela,
2022). The companion
project, ReportGelaDURT,
analyses the data and produces the paper figures.
Due to privacy concerns, raw data are not publicly available. Please
email Thomas Scriba at thomas.scriba@uct.ac.za should you require
access.
Note that the package has been updated since the paper was published, and the version at the time of publication is available as a GitHub release.
To install the latest version of DataTidyGelaDURT from
GitHub, run the following:
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("SATVILab/DataTidyGelaDURT")To install the version of DataTidyGelaDURT as when submitted for final
publication, run the following:
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("SATVILab/DataTidyGelaDURT@v1.0.0")The following datasets are available:
| Dataset |
|---|
| data_tidy_clin_adult |
| data_tidy_clin_infant |
| data_tidy_freq |
| data_tidy_freq_ifng |
| data_tidy_hladr_adult |
| data_tidy_hladr_infant |
| data_tidy_mem |
Use ?DataTidyGelaDURT::<dataset_name> to see documentation for each
dataset.
CSV versions of the data are available inside inst/extdata/. Once
installed, the following R code will give the path to the CSV files:
system.file("extdata", package = "DataTidyGelaDURT").
The data are processed using Rmd files inside data-raw/.