diff --git a/bin/find_best_ref.py b/bin/find_best_ref.py index 54f4a73..e5e7edb 100644 --- a/bin/find_best_ref.py +++ b/bin/find_best_ref.py @@ -10,8 +10,6 @@ from ncbi.datasets.openapi import ApiException as DatasetsApiException from ncbi.datasets import GenomeApi as DatasetsGenomeApi -from ncbi.datasets.package import dataset - def read_clusters(yaml_path : pathlib.Path) -> tuple([dict, set]): with open(yaml_path) as file: diff --git a/envs/reference_seeker_env.yaml b/envs/reference_seeker_env.yaml index a4a3eaa..6c532d4 100644 --- a/envs/reference_seeker_env.yaml +++ b/envs/reference_seeker_env.yaml @@ -35,10 +35,10 @@ dependencies: # - pbzip2=1.1.13=0 # - perl=5.32.1=2_h7f98852_perl5 # - pigz=2.6=h27826a3_0 - - pip==19.2.3 - - python==3.7.6 + - pip + - python=3.* # - python-isal=1.0.1=py310h5764c6d_0 - - pandas==1.3.2 + - pandas=1.* # - python_abi=3.10=2_cp310 # - readline=8.1.2=h0f457ee_0 - referenceseeker==1.8.0 @@ -50,6 +50,5 @@ dependencies: # - xopen=1.6.0=py310hff52083_0 # - xz=5.2.6=h166bdaf_0 # - zlib=1.2.12=h166bdaf_3 - - pip: - - ncbi-datasets-pylib + - ncbi-datasets-pylib prefix: /mnt/scratch_dir/wolthuir/conda/envs/reference_seeker