NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,ae)
S3method(plot,geim)
S3method(plot,geimCV)
S3method(predict,geim)
S3method(print,ae)
S3method(print,geim)
S3method(print,geimCV)
S3method(print,rcmp)
S3method(print,ref)
S3method(summary,ae)
export(ae)
export(cor.gene_expr)
export(format_ids)
export(format_to_ref)
export(ge_im)
export(ge_imCV)
export(get_logFC)
export(get_refTP)
export(list_refs)
export(makeTransparent)
export(make_ref)
export(mperf)
export(plot_cor)
export(plot_cor.ae)
export(plot_refs)
export(prepare_refdata)
export(ref_compare)
importFrom(Rdpack,reprompt)
importFrom(beeswarm,beeswarm)
importFrom(beeswarm,swarmy)
importFrom(data.table,frank)
importFrom(grDevices,col2rgb)
importFrom(grDevices,rgb)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(ica,icafast)
importFrom(limma,lmFit)
importFrom(mgcv,gam)
importFrom(mgcv,interpret.gam)
importFrom(mgcv,predict.gam)
importFrom(parallel,clusterExport)
importFrom(parallel,makeForkCluster)
importFrom(parallel,parApply)
importFrom(parallel,parLapply)
importFrom(parallel,parSapply)
importFrom(parallel,stopCluster)
importFrom(pryr,standardise_call)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dnorm)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(utils,data)
importFrom(utils,getFromNamespace)